CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67611
CDX69112
CDX71738
CDX72515
CDX73446
CDX76314
CDX78265
CDX89115
CDX94185
CDX97739
CDY07519
CDY10936
CDY17511
CDY30157
CDY48920
CDY52648
CDY66912
CDY66913

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37180.1	CDX97739	AT3G16310.1	21798944
AT2G37180.1	CDY30157	AT3G16310.1	21798944
AT2G37180.1	CDX67611	AT3G54820.1	21798944
AT2G37180.1	CDX73446	AT3G54820.1	21798944
AT2G37180.1	CDX78265	AT3G54820.1	21798944
AT2G37180.1	CDY07519	AT3G54820.1	21798944
AT2G37180.1	CDX71738	AT3G61430.1	21798944
AT2G37180.1	CDX89115	AT3G61430.1	21798944
AT2G37180.1	CDY48920	AT3G61430.1	21798944
AT2G37180.1	CDY66912	AT3G61430.1	21798944
AT2G37180.1	CDY66913	AT3G61430.1	21798944
AT2G37180.1	CDX94185	AT4G23400.1	21798944
AT2G37180.1	CDY10936	AT4G23400.1	21798944
AT2G37180.1	CDX69112	AT4G35100.1	21798944
AT2G37180.1	CDX72515	AT4G35100.1	21798944
AT2G37180.1	CDX76314	AT4G35100.1	21798944
AT2G37180.1	CDY17511	AT4G35100.1	21798944
AT2G37180.1	CDY52648	AT4G35100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023102.1-P	Field mustard	plasma membrane	100.0	100.0
CDY70391	Canola	extracellular, golgi	55.12	98.11
CDX91340	Canola	plasma membrane	98.23	97.54
CDX74983	Canola	cytosol, peroxisome, plasma membrane	67.49	96.95
CDX91341	Canola	plasma membrane	97.53	96.84
CDY46759	Canola	plasma membrane	95.05	94.39
AT2G37180.1	Thale cress	plasma membrane	93.99	93.33
CDY56697	Canola	plasma membrane	91.87	90.59
CDX78177	Canola	plasma membrane	91.52	90.24
CDX74984	Canola	cytosol, peroxisome, plasma membrane	98.23	89.68
CDY13298	Canola	plasma membrane	90.46	89.2
CDX71032	Canola	plasma membrane	76.33	83.08
CDY09192	Canola	plasma membrane	75.97	83.01
CDX88767	Canola	plasma membrane	75.97	82.69
AT2G37170.2	Thale cress	plasma membrane	95.05	82.01
CDY31523	Canola	plasma membrane	75.27	81.92
PGSC0003DMT400027154	Potato	plasma membrane	81.27	81.85
CDY53629	Canola	cytosol	74.56	81.47
Solyc10g084120.1.1	Tomato	nucleus	80.57	81.14
EER98451	Sorghum	plasma membrane	83.04	81.03
Zm00001d019563_P006	Maize	plasma membrane	82.69	80.69
TraesCS2A01G198500.1	Wheat	plasma membrane	82.33	80.34
TraesCS2D01G206300.1	Wheat	golgi	81.98	80.0
TraesCS2B01G225900.1	Wheat	golgi	81.98	80.0
Os07t0448800-01	Rice	plasma membrane	81.98	80.0
Zm00001d005421_P001	Maize	plasma membrane	81.98	79.45
CDX67611	Canola	plasma membrane	78.45	77.62
CDY07519	Canola	plasma membrane	78.45	77.62
CDX72515	Canola	golgi, plasma membrane	69.26	77.17
CDX78265	Canola	plasma membrane	77.74	76.92
CDX73446	Canola	peroxisome	77.39	76.57
CDY66912	Canola	extracellular	55.48	76.21
CDY52648	Canola	plasma membrane	75.62	76.16
CDX69112	Canola	plasma membrane	75.62	76.16
CDX76314	Canola	cytosol	75.27	75.8
CDY07681	Canola	plasma membrane	77.03	75.69
CDY17511	Canola	plasma membrane	74.91	75.44
CDY14415	Canola	cytosol, peroxisome, plasma membrane	75.97	74.65
CDX89115	Canola	plasma membrane	57.95	72.89
HORVU2Hr1G038740.1	Barley	golgi, mitochondrion, plasma membrane	82.33	68.33
CDX90046	Canola	cytosol, peroxisome, plasma membrane	68.2	67.48
CDY10936	Canola	plasma membrane	68.2	67.25
CDY51161	Canola	cytosol, peroxisome, plasma membrane	67.84	67.13
CDX94185	Canola	plasma membrane	67.84	66.9
CDX71738	Canola	plasma membrane	67.49	66.78
CDY48920	Canola	plasma membrane	67.49	66.78
CDY38017	Canola	plasma membrane	67.49	66.78
CDX74777	Canola	cytosol, peroxisome, plasma membrane	67.49	66.78
CDY18886	Canola	cytosol, peroxisome, plasma membrane	67.49	66.78
CDX83385	Canola	cytosol, peroxisome, plasma membrane	67.49	66.78
CDY07221	Canola	cytosol, peroxisome, plasma membrane	67.49	66.78
CDX74334	Canola	cytosol, peroxisome, plasma membrane	67.84	66.67
CDY27346	Canola	cytosol, peroxisome, plasma membrane	67.14	66.43
CDX95670	Canola	cytosol, peroxisome, plasma membrane	67.14	66.43
CDY37078	Canola	cytosol, peroxisome, plasma membrane	67.14	66.43
CDX91911	Canola	cytosol, peroxisome, plasma membrane	67.49	66.32
CDY15165	Canola	plastid	68.2	59.57
CDX97733	Canola	endoplasmic reticulum, extracellular	33.92	38.71
CDY30146	Canola	endoplasmic reticulum, extracellular, plasma membrane	33.92	38.71
CDY20190	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.57	38.15
CDY63821	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.57	38.15
CDX82410	Canola	plasma membrane	33.22	37.75
CDY69446	Canola	cytosol	32.86	36.9
CDY07142	Canola	cytosol	32.86	36.9
CDY47816	Canola	endoplasmic reticulum, plasma membrane, vacuole	32.16	35.97
CDY48983	Canola	plasma membrane	31.8	35.57
CDY28539	Canola	plasma membrane	31.8	35.57
CDY28932	Canola	endoplasmic reticulum, extracellular, vacuole	26.15	35.24
CDY35336	Canola	extracellular	17.67	34.97
CDX83623	Canola	golgi, plasma membrane, plastid	31.1	34.78
CDY13639	Canola	plasma membrane	31.1	34.78
CDY66321	Canola	plasma membrane	32.51	34.59
CDX77009	Canola	cytosol, plasma membrane, vacuole	30.39	34.54
CDY66645	Canola	plastid	26.86	34.39
CDY67380	Canola	plastid	26.86	34.39
CDY65121	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.04	34.0
CDY51678	Canola	plasma membrane, vacuole	30.04	34.0
CDY64499	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.04	34.0
CDX77768	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.04	33.86
CDY59296	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.04	33.86
CDY53270	Canola	plasma membrane	30.04	33.86
CDY48045	Canola	golgi, mitochondrion, plasma membrane	31.8	33.83
CDX75873	Canola	extracellular, golgi, vacuole	32.86	33.82
CDX96453	Canola	cytosol	31.1	33.21
CDY11123	Canola	cytosol	30.74	32.83
CDX68239	Canola	cytosol	30.74	32.83
CDX72962	Canola	plasma membrane	30.74	32.83
CDY26214	Canola	plasma membrane	30.39	32.21
CDY19176	Canola	plasma membrane	30.39	32.21
CDY21731	Canola	golgi, mitochondrion, plasma membrane	29.68	31.46
CDX81850	Canola	golgi, mitochondrion, plasma membrane	29.33	31.09
CDX99048	Canola	mitochondrion, plastid	25.44	27.91
CDY47413	Canola	mitochondrion, plastid	25.09	27.52
CDY66913	Canola	cytosol, mitochondrion, nucleus	3.89	23.91

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	unigene:Bna.867	EnsemblPlants:CDY46758
ProteinID:CDY46758	ProteinID:CDY46758.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00086082001
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF260	GO:Q9XHG6	UniProt:Q9XHG6	SUPFAM:SSF81338	TIGRFAMs:TIGR00861
TMHMM:TMhelix	UniParc:UPI00000ACDC5	SEG:seg	:	:	:

Description

BnaA03g17020DBnaA03g17020D protein [Source:UniProtKB/TrEMBL;Acc:Q9XHG6]

Coordinates

chrLK032684:-:101876..103239

Molecular Weight (calculated)

30029.3 Da

IEP (calculated)

7.025

GRAVY (calculated)

0.515

Length

283 amino acids

Sequence
(BLAST)

001: MAKDVEGAEG VTARDYEDPP PTPFFDAEEL TKWSLYRAVI AEFVATLLFL YVTVLTVIGY KISSDTKAGG DDCGGVGILG ISWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVSL VRAVLYMVAQ CLGAICGVGF VKAFQSAYYV RYGGGANSLA DGYSTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNES KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAA

Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)

001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV

Arabidopsis Description

PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.