Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane, vacuole

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, vacuole
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX84933
CDX88803
CDX92368
CDY03907
CDY09128
CDY15722
CDY27605
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G25810.1 CDX84933 AT1G27300.1 21798944
AT2G25810.1 CDY03907 AT1G27300.1 21798944
AT2G25810.1 CDY15722 AT1G27300.1 21798944
AT2G25810.1 CDY27605 AT1G27300.1 21798944
AT2G25810.1 CDX70995 AT5G22290.1 21798944
AT2G25810.1 CDX88803 AT5G22290.1 21798944
AT2G25810.1 CDX92368 AT5G22290.1 21798944
AT2G25810.1 CDY09128 AT5G22290.1 21798944
AT2G25810.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra034271.1-P Field mustard cytosol, plasma membrane, vacuole 98.8 98.8
CDY35336 Canola extracellular 53.41 93.01
AT2G25810.1 Thale cress cytosol, golgi, plasma membrane 92.77 92.77
KRH52727 Soybean cytosol 76.31 77.24
KRH62059 Soybean cytosol, plasma membrane, vacuole 76.31 77.24
PGSC0003DMT400024847 Potato extracellular, plasma membrane, vacuole 74.7 75.3
Solyc08g066840.2.1 Tomato endoplasmic reticulum, plasma membrane 73.9 74.49
GSMUA_Achr10P... Banana cytosol, plasma membrane, vacuole 67.07 67.07
TraesCS3D01G163400.1 Wheat endoplasmic reticulum, extracellular, vacuole 59.44 60.16
TraesCS3A01G434600.1 Wheat endoplasmic reticulum, extracellular, vacuole 56.63 59.49
Os01t0232000-00 Rice cytosol, endoplasmic reticulum, plasma membrane 59.84 59.36
EES02191 Sorghum cytosol 59.84 59.13
TraesCS3B01G182200.1 Wheat endoplasmic reticulum, extracellular, vacuole 58.63 58.17
Zm00001d015518_P001 Maize endoplasmic reticulum, extracellular 24.5 57.55
Zm00001d019676_P001 Maize endoplasmic reticulum, extracellular, plastid 24.1 56.6
TraesCS3A01G155800.1 Wheat plasma membrane 55.42 55.65
TraesCS3B01G182400.1 Wheat plasma membrane 55.42 55.65
VIT_04s0008g03550.t01 Wine grape plasma membrane 66.67 55.15
Zm00001d039713_P001 Maize plasma membrane 55.02 55.02
Zm00001d020747_P001 Maize extracellular 23.29 54.21
Zm00001d037779_P001 Maize cytosol, plasma membrane, vacuole 55.42 54.12
TraesCS5A01G518300.1 Wheat golgi, plasma membrane, vacuole 55.42 53.91
CDY66645 Canola plastid 47.79 53.85
CDY67380 Canola plastid 47.79 53.85
TraesCS4B01G349500.1 Wheat plasma membrane 55.02 53.73
TraesCS4D01G344300.1 Wheat plasma membrane 55.02 53.73
CDX82410 Canola plasma membrane 53.41 53.41
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 44.98 53.33
KXG31483 Sorghum extracellular, golgi, plasma membrane 53.82 52.96
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 52.61 52.82
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 53.01 52.8
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 53.01 52.8
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 52.61 52.61
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 52.61 52.61
CDY53270 Canola plasma membrane 53.01 52.59
CDX97733 Canola endoplasmic reticulum, extracellular 52.21 52.42
Zm00001d039293_P001 Maize plastid 59.84 51.92
CDX83623 Canola golgi, plasma membrane, plastid 52.61 51.78
CDY13639 Canola plasma membrane 52.61 51.78
CDY51678 Canola plasma membrane, vacuole 51.81 51.6
CDY28539 Canola plasma membrane 52.21 51.38
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 52.21 51.38
CDY48983 Canola plasma membrane 52.21 51.38
GSMUA_Achr9P06260_001 Banana cytosol, golgi, plasma membrane 51.81 50.59
Os01t0232100-01 Rice cytosol, endoplasmic reticulum, extracellular 51.81 50.39
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 50.6 50.2
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 50.6 50.2
CDX96453 Canola cytosol 52.21 49.06
GSMUA_Achr1P13800_001 Banana cytosol 49.8 48.82
CDX72962 Canola plasma membrane 51.81 48.68
CDY66321 Canola plasma membrane 51.81 48.5
CDY07142 Canola cytosol 49.0 48.41
CDY69446 Canola cytosol 49.0 48.41
CDX75873 Canola extracellular, golgi, vacuole 53.41 48.36
CDY48045 Canola golgi, mitochondrion, plasma membrane 51.41 48.12
CDX68239 Canola cytosol 50.6 47.55
CDY11123 Canola cytosol 50.6 47.55
CDX81850 Canola golgi, mitochondrion, plasma membrane 49.0 45.69
CDY21731 Canola golgi, mitochondrion, plasma membrane 49.0 45.69
HORVU4Hr1G085250.2 Barley plastid 55.02 45.51
CDY19176 Canola plasma membrane 48.19 44.94
CDY26214 Canola plasma membrane 48.19 44.94
Os05t0231700-01 Rice golgi, mitochondrion, plasma membrane 56.22 44.59
EES17913 Sorghum cytosol, plastid 55.02 43.63
Zm00001d010410_P001 Maize plasma membrane, plastid 53.82 43.09
HORVU3Hr1G031620.5 Barley nucleus, peroxisome, plastid 53.41 41.82
CDX99048 Canola mitochondrion, plastid 36.95 35.66
CDY47413 Canola mitochondrion, plastid 36.55 35.27
CDY66912 Canola extracellular 27.71 33.5
CDY70391 Canola extracellular, golgi 21.29 33.33
CDX89115 Canola plasma membrane 29.32 32.44
HORVU3Hr1G031680.1 Barley vacuole 34.14 31.72
CDX72515 Canola golgi, plasma membrane 32.13 31.5
CDX69112 Canola plasma membrane 34.94 30.96
CDX76314 Canola cytosol 34.94 30.96
CDY52648 Canola plasma membrane 34.94 30.96
CDX78177 Canola plasma membrane 35.34 30.66
CDY56697 Canola plasma membrane 35.34 30.66
CDY17511 Canola plasma membrane 34.54 30.61
CDY46759 Canola plasma membrane 34.94 30.53
CDY09192 Canola plasma membrane 31.73 30.5
CDY46758 Canola plasma membrane 34.54 30.39
CDX71032 Canola plasma membrane 31.73 30.38
CDX88767 Canola plasma membrane 31.73 30.38
CDX91340 Canola plasma membrane 34.54 30.18
CDX91341 Canola plasma membrane 34.54 30.18
CDX90046 Canola cytosol, peroxisome, plasma membrane 34.54 30.07
CDY31523 Canola plasma membrane 31.33 30.0
CDY13298 Canola plasma membrane 34.54 29.97
CDY51161 Canola cytosol, peroxisome, plasma membrane 34.14 29.72
CDX74334 Canola cytosol, peroxisome, plasma membrane 34.14 29.51
CDX91911 Canola cytosol, peroxisome, plasma membrane 34.14 29.51
CDX67611 Canola plasma membrane 33.73 29.37
CDX71738 Canola plasma membrane 33.73 29.37
CDX74777 Canola cytosol, peroxisome, plasma membrane 33.73 29.37
CDY07221 Canola cytosol, peroxisome, plasma membrane 33.73 29.37
CDY07519 Canola plasma membrane 33.73 29.37
CDY18886 Canola cytosol, peroxisome, plasma membrane 33.73 29.37
CDY27346 Canola cytosol, peroxisome, plasma membrane 33.73 29.37
CDY37078 Canola cytosol, peroxisome, plasma membrane 33.73 29.37
CDY38017 Canola plasma membrane 33.73 29.37
CDY48920 Canola plasma membrane 33.73 29.37
CDX73446 Canola peroxisome 33.33 29.02
CDX78265 Canola plasma membrane 33.33 29.02
CDX83385 Canola cytosol, peroxisome, plasma membrane 33.33 29.02
CDY53629 Canola cytosol 30.12 28.96
CDX95670 Canola cytosol, peroxisome, plasma membrane 32.93 28.67
CDY10936 Canola plasma membrane 32.13 27.87
CDX74984 Canola cytosol, peroxisome, plasma membrane 34.54 27.74
CDX94185 Canola plasma membrane 31.73 27.53
CDY07681 Canola plasma membrane 31.73 27.43
CDY14415 Canola cytosol, peroxisome, plasma membrane 31.73 27.43
CDX74983 Canola cytosol, peroxisome, plasma membrane 21.69 27.41
CDY15165 Canola plastid 33.73 25.93
CDY66913 Canola cytosol, mitochondrion, nucleus 1.2 6.52
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3GO:A0A078CLW7InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlants:CDX77009
ProteinID:CDX77009ProteinID:CDX77009.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00127573001InterPro:IPR023271
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF186SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0004EEE739SEG:seg
Description
BnaC04g38040D
Coordinates
chrLK031809:+:455021..456453
Molecular Weight (calculated)
26120.9 Da
IEP (calculated)
5.437
GRAVY (calculated)
0.718
Length
249 amino acids
Sequence
(BLAST)
001: MKKIDLGNHR EAAQPECIKA LIVEFITTFF FVFAGVGSAM ATDSLVGNTL VGLLAVAVAH ALVVAVMISA GHISGGHLNP AVTIGLLFGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGISYTQGIV WEIILTFSLL FTVYATMVDP KKGSLDGLGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRSDVPL ADDEQPFLN
Best Arabidopsis Sequence Match ( AT2G25810.1 )
(BLAST)
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
Arabidopsis Description
TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [cytosol,plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.