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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 3
  • vacuole 3
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EES05123

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G25810.1 EES05123 AT1G27300.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d010410_P001 Maize plasma membrane, plastid 87.58 88.42
Zm00001d015518_P001 Maize endoplasmic reticulum, extracellular 28.98 85.85
Zm00001d019676_P001 Maize endoplasmic reticulum, extracellular, plastid 28.66 84.91
Zm00001d020747_P001 Maize extracellular 27.07 79.44
TraesCS4B01G349500.1 Wheat plasma membrane 63.69 78.43
TraesCS4D01G344300.1 Wheat plasma membrane 63.06 77.65
TraesCS5A01G518300.1 Wheat golgi, plasma membrane, vacuole 62.42 76.56
HORVU4Hr1G085250.2 Barley plastid 63.69 66.45
Os05t0231700-01 Rice golgi, mitochondrion, plasma membrane 61.78 61.78
GSMUA_Achr10P... Banana cytosol, plasma membrane, vacuole 46.82 59.04
EES02191 Sorghum cytosol 46.82 58.33
PGSC0003DMT400024847 Potato extracellular, plasma membrane, vacuole 44.27 56.28
CDY35336 Canola extracellular 25.48 55.94
Solyc08g066840.2.1 Tomato endoplasmic reticulum, plasma membrane 43.95 55.87
KXG31483 Sorghum extracellular, golgi, plasma membrane 44.9 55.73
CDX77009 Canola cytosol, plasma membrane, vacuole 43.63 55.02
Bra034271.1-P Field mustard cytosol, plasma membrane, vacuole 43.31 54.62
AT2G25810.1 Thale cress cytosol, golgi, plasma membrane 43.31 54.62
GSMUA_Achr9P06260_001 Banana cytosol, golgi, plasma membrane 41.72 51.37
KRH52727 Soybean cytosol 39.17 50.0
KRH62059 Soybean cytosol, plasma membrane, vacuole 39.17 50.0
GSMUA_Achr1P13800_001 Banana cytosol 39.81 49.21
EES12617 Sorghum plasma membrane 37.26 46.99
KXG31086 Sorghum golgi, plasma membrane, vacuole 36.94 46.59
VIT_04s0008g03550.t01 Wine grape plasma membrane 44.27 46.18
EER92857 Sorghum cytosol 36.62 46.0
EER89797 Sorghum plasma membrane 34.08 43.15
EES04303 Sorghum cytosol 32.8 39.92
EER94020 Sorghum golgi, mitochondrion, plasma membrane 32.8 38.72
EES11105 Sorghum mitochondrion, plasma membrane 32.48 38.06
EER95659 Sorghum mitochondrion 29.62 34.32
OQU82093 Sorghum plasma membrane 27.07 31.84
EER98451 Sorghum plasma membrane 25.48 27.59
OQU91911 Sorghum plasma membrane 24.2 26.95
EER98454 Sorghum plasma membrane 24.52 26.92
EER98453 Sorghum plasma membrane 24.52 26.92
EER98452 Sorghum plasma membrane 24.52 26.92
EER98457 Sorghum plasma membrane 24.52 26.92
EES11124 Sorghum plasma membrane 24.52 26.37
EES05459 Sorghum plasma membrane 23.89 25.95
EER89434 Sorghum peroxisome 23.25 24.66
EES11257 Sorghum cytosol, peroxisome, plasma membrane 22.29 24.31
OQU85985 Sorghum cytosol, peroxisome, plasma membrane 22.29 24.14
EES07484 Sorghum plasma membrane 21.97 23.88
OQU88961 Sorghum plastid 23.57 19.79
KXG36091 Sorghum cytosol, peroxisome, plasma membrane 16.56 15.95
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3EntrezGene:8066640InterPro:Aquaporin-likeInterPro:Aquaporin_transptrUniProt:C5YV67
EnsemblPlants:EES17913ProteinID:EES17913ProteinID:EES17913.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005886GO:GO:0005887
GO:GO:0006810GO:GO:0006833GO:GO:0008150GO:GO:0009705GO:GO:0015250GO:GO:0015267
GO:GO:0016020GO:GO:0016021GO:GO:0034220GO:GO:0042807GO:GO:0055085InterPro:IPR023271
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF143EnsemblPlantsGene:SORBI_3009G085900SUPFAM:SSF81338unigene:Sbi.14210TMHMM:TMhelixUniParc:UPI0001A88A57
RefSeq:XP_002439483.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr9:+:14570383..14573259
Molecular Weight (calculated)
32770.3 Da
IEP (calculated)
7.696
GRAVY (calculated)
0.563
Length
314 amino acids
Sequence
(BLAST)
001: MSHPPPPPVD QNISLRFCES FSLQGTETPG AFTPPAPAFP SRPRTGATTR LLLETFHSSM AKLVNKLVDS FEEQDTPDVG CVRAVLAELV LTFLFVFTGV
101: SAAMAAGSGV KPGEAMPMAT LAAVAIAHAL AAGVLVTAGF HVSGGHLNPA VTVGLMVRGH ITKLRAVLYV AAQVLASSLA CILLRYLSGG MVTPVHALGA
201: GISPMQGLVM EVILTFSLLF VTYAMILDPR SQVRTIGPLL TGLIVGANSL AGGNFSGASM NPARSFGPAL ASGVWTNHWI YWIGPLLGGP LAGFIYESLF
301: IVNKTHEPLL NGDI
Best Arabidopsis Sequence Match ( AT2G25810.1 )
(BLAST)
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
Arabidopsis Description
TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.