Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d016570_P001 | |
| Zm00001d050563_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25810.1 | Zm00001d016570_P001 | AT1G27300.1 | 21798944 |
| AT2G25810.1 | Zm00001d050563_P001 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019676_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 97.17 | 97.17 |
| Zm00001d020747_P001 | Maize | extracellular | 83.02 | 82.24 |
| CDY35336 | Canola | extracellular | 56.6 | 41.96 |
| Zm00001d037779_P001 | Maize | cytosol, plasma membrane, vacuole | 85.85 | 35.69 |
| TraesCS4D01G344300.1 | Wheat | plasma membrane | 73.58 | 30.59 |
| Zm00001d010410_P001 | Maize | plasma membrane, plastid | 88.68 | 30.23 |
| TraesCS4B01G349500.1 | Wheat | plasma membrane | 72.64 | 30.2 |
| TraesCS5A01G518300.1 | Wheat | golgi, plasma membrane, vacuole | 72.64 | 30.08 |
| EES17913 | Sorghum | cytosol, plastid | 85.85 | 28.98 |
| HORVU4Hr1G085250.2 | Barley | plastid | 72.64 | 25.58 |
| Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 59.43 | 25.51 |
| GSMUA_Achr9P06260_001 | Banana | cytosol, golgi, plasma membrane | 61.32 | 25.49 |
| Zm00001d039713_P001 | Maize | plasma membrane | 59.43 | 25.3 |
| PGSC0003DMT400024847 | Potato | extracellular, plasma membrane, vacuole | 58.49 | 25.1 |
| CDX77009 | Canola | cytosol, plasma membrane, vacuole | 57.55 | 24.5 |
| Os05t0231700-01 | Rice | golgi, mitochondrion, plasma membrane | 71.7 | 24.2 |
| Bra034271.1-P | Field mustard | cytosol, plasma membrane, vacuole | 56.6 | 24.1 |
| AT2G25810.1 | Thale cress | cytosol, golgi, plasma membrane | 56.6 | 24.1 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, vacuole | 54.72 | 23.29 |
| GSMUA_Achr1P13800_001 | Banana | cytosol | 55.66 | 23.23 |
| KRH52727 | Soybean | cytosol | 52.83 | 22.76 |
| KRH62059 | Soybean | cytosol, plasma membrane, vacuole | 51.89 | 22.36 |
| Zm00001d039293_P001 | Maize | plastid | 58.49 | 21.6 |
| Zm00001d002738_P001 | Maize | plasma membrane | 46.23 | 19.76 |
| Zm00001d026177_P001 | Maize | extracellular | 46.23 | 19.76 |
| Zm00001d011778_P001 | Maize | plasma membrane | 47.17 | 19.68 |
| Zm00001d051362_P001 | Maize | plasma membrane | 46.23 | 19.68 |
| Zm00001d027652_P001 | Maize | plasma membrane | 43.4 | 18.4 |
| VIT_04s0008g03550.t01 | Wine grape | plasma membrane | 51.89 | 18.27 |
| Zm00001d013956_P003 | Maize | plasma membrane | 44.34 | 17.94 |
| Zm00001d017485_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 41.51 | 17.6 |
| Zm00001d032610_P003 | Maize | mitochondrion, plastid | 43.4 | 17.29 |
| Zm00001d002952_P001 | Maize | plasma membrane | 42.45 | 16.98 |
| Zm00001d026178_P002 | Maize | plastid | 35.85 | 14.23 |
| Zm00001d003006_P001 | Maize | plasma membrane | 33.96 | 12.63 |
| Zm00001d014285_P001 | Maize | plasma membrane | 33.02 | 12.37 |
| Zm00001d019565_P001 | Maize | plasma membrane | 32.08 | 11.81 |
| Zm00001d019563_P006 | Maize | plasma membrane | 32.08 | 11.72 |
| Zm00001d005421_P001 | Maize | plasma membrane | 32.08 | 11.64 |
| Zm00001d017288_P001 | Maize | plasma membrane | 31.13 | 11.46 |
| Zm00001d051174_P002 | Maize | plasma membrane | 31.13 | 11.42 |
| Zm00001d005410_P001 | Maize | plasma membrane | 30.19 | 11.19 |
| Zm00001d051872_P001 | Maize | plasma membrane | 29.25 | 10.76 |
| Zm00001d002690_P001 | Maize | plasma membrane | 29.25 | 10.76 |
| Zm00001d017526_P001 | Maize | plasma membrane | 29.25 | 10.73 |
| Zm00001d051403_P001 | Maize | plasma membrane | 29.25 | 10.62 |
| Zm00001d022608_P001 | Maize | plasma membrane | 28.3 | 10.42 |
| Zm00001d048520_P014 | Maize | mitochondrion | 16.98 | 6.72 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:35.1 | UniProt:A0A1D6H2L4 | ProteinID:AQK69078.1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR023271 | InterPro:MIP | PFAM:PF00230 |
| PRINTS:PR00783 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF143 | SUPFAM:SSF81338 | TMHMM:TMhelix | UniParc:UPI0002212DCF |
| EnsemblPlantsGene:Zm00001d015518 | EnsemblPlants:Zm00001d015518_P001 | EnsemblPlants:Zm00001d015518_T001 | : | : | : |
Description
Aquaporin TIP4-1
Coordinates
chr5:+:95499574..95499894
Molecular Weight (calculated)
11234.9 Da
IEP (calculated)
11.092
GRAVY (calculated)
0.563
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVTPVHALG AGISPMQGLV MAVILTFSLL FVTYAMILDP RSQVRTIGPL LTGLIVGANS LAGGNFTGAS MNPARSFGPA MATGVWTNHW VYWIGPFRFS
101: RGLDAP
101: RGLDAP
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
Arabidopsis Description
TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.