Factsheet for Zm00001d013956_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002952_P001
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d013956_P003
Zm00001d032610_P003
Zm00001d038803_P001
Zm00001d048520_P014

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73190.1	Zm00001d002952_P001	AT1G73190.1	23163742
AT1G73190.1	Zm00001d013956_P003	AT1G73190.1	23163742
AT1G73190.1	Zm00001d032610_P003	AT1G73190.1	23163742
AT1G73190.1	Zm00001d048520_P014	AT1G73190.1	23163742
AT1G73190.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT1G73190.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT1G73190.1	Zm00001d038803_P001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94020	Sorghum	golgi, mitochondrion, plasma membrane	95.04	93.61
Zm00001d032610_P003	Maize	mitochondrion, plastid	94.27	92.86
Os10t0492600-01	Rice	plastid	91.22	90.53
TraesCS1A01G165400.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	87.79	87.45
TraesCS1D01G175200.1	Wheat	unclear	87.02	86.69
HORVU1Hr1G043890.2	Barley	mitochondrion	87.02	86.69
TraesCS1B01G182200.1	Wheat	golgi	86.64	86.31
GSMUA_Achr4P26010_001	Banana	cytosol, golgi, plasma membrane	77.1	79.53
GSMUA_Achr2P10640_001	Banana	cytosol, golgi, plasma membrane	74.81	77.17
VIT_16s0039g00220.t01	Wine grape	cytosol	66.03	66.8
PGSC0003DMT400069330	Potato	cytosol	62.98	63.71
Solyc06g072130.2.1	Tomato	extracellular	62.98	63.71
KRH38823	Soybean	nucleus	60.69	62.35
KRH09321	Soybean	cytosol, mitochondrion, plasma membrane	60.69	62.35
PGSC0003DMT400039507	Potato	cytosol, golgi, plasma membrane	61.83	62.31
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	61.83	62.31
CDY66321	Canola	plasma membrane	62.98	62.03
AT1G73190.1	Thale cress	plasma membrane	63.36	61.94
KRH34280	Soybean	endoplasmic reticulum	59.92	61.81
CDY11123	Canola	cytosol	62.21	61.51
CDX72962	Canola	plasma membrane	62.21	61.51
CDX68239	Canola	cytosol	62.21	61.51
CDY48045	Canola	golgi, mitochondrion, plasma membrane	62.21	61.28
Bra008079.1-P	Field mustard	golgi, mitochondrion, plasma membrane	62.21	61.28
Bra016014.1-P	Field mustard	cytosol	61.83	61.13
CDX96453	Canola	cytosol	61.83	61.13
AT1G17810.1	Thale cress	cytosol, golgi, plasma membrane	61.83	60.67
Bra025947.1-P	Field mustard	cytosol, golgi, plasma membrane	61.83	60.67
CDY26214	Canola	plasma membrane	61.45	60.3
CDY19176	Canola	plasma membrane	61.45	60.3
KRG92517	Soybean	cytosol	58.4	60.24
Bra031005.1-P	Field mustard	golgi, mitochondrion, plasma membrane	61.07	59.93
CDY21731	Canola	golgi, mitochondrion, plasma membrane	61.07	59.93
Zm00001d002952_P001	Maize	plasma membrane	60.31	59.62
CDX81850	Canola	golgi, mitochondrion, plasma membrane	60.69	59.55
Zm00001d011778_P001	Maize	plasma membrane	54.96	56.69
Zm00001d027652_P001	Maize	plasma membrane	53.82	56.4
Zm00001d051362_P001	Maize	plasma membrane	48.09	50.6
Zm00001d017485_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	46.95	49.2
Zm00001d002738_P001	Maize	plasma membrane	45.8	48.39
Zm00001d026177_P001	Maize	extracellular	45.42	47.98
Zm00001d039713_P001	Maize	plasma membrane	43.13	45.38
Zm00001d015518_P001	Maize	endoplasmic reticulum, extracellular	17.94	44.34
Zm00001d019676_P001	Maize	endoplasmic reticulum, extracellular, plastid	17.94	44.34
Zm00001d039293_P001	Maize	plastid	48.09	43.9
Zm00001d048520_P014	Maize	mitochondrion	43.51	42.54
Zm00001d037779_P001	Maize	cytosol, plasma membrane, vacuole	40.08	41.18
Zm00001d020747_P001	Maize	extracellular	16.03	39.25
Zm00001d026178_P002	Maize	plastid	35.5	34.83
Zm00001d010410_P001	Maize	plasma membrane, plastid	40.08	33.76
Zm00001d005421_P001	Maize	plasma membrane	35.88	32.19
Zm00001d014285_P001	Maize	plasma membrane	33.97	31.45
Zm00001d019563_P006	Maize	plasma membrane	34.35	31.03
Zm00001d005410_P001	Maize	plasma membrane	33.21	30.42
Zm00001d019565_P001	Maize	plasma membrane	32.82	29.86
Zm00001d003006_P001	Maize	plasma membrane	32.44	29.82
Zm00001d017288_P001	Maize	plasma membrane	32.44	29.51
Zm00001d051174_P002	Maize	plasma membrane	32.44	29.41
Zm00001d022608_P001	Maize	plasma membrane	32.06	29.17
Zm00001d002690_P001	Maize	plasma membrane	31.3	28.47
Zm00001d051872_P001	Maize	plasma membrane	31.3	28.47
Zm00001d017526_P001	Maize	plasma membrane	30.92	28.03
Zm00001d051403_P001	Maize	plasma membrane	30.92	27.74

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	EntrezGene:541896	UniProt:A0A1Q0ZK72	EMBL:AF326504	ProteinID:AQK64866.1
InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0008150
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0032586	GO:GO:0055085	InterPro:IPR023271
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF132	UniProt:Q9ATL7	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000009C8E2
EnsemblPlantsGene:Zm00001d013956	EnsemblPlants:Zm00001d013956_P003	EnsemblPlants:Zm00001d013956_T003	SEG:seg	:	:

Description

tonoplast intrinsic protein3 tonoplast intrinsic protein3

Coordinates

chr5:+:26132033..26133292

Molecular Weight (calculated)

27204.3 Da

IEP (calculated)

8.791

GRAVY (calculated)

0.635

Length

262 amino acids

Sequence
(BLAST)

001: MSTGVRPGRR FTVGRSEDAT HPDTIRAAIS EFIATAIFVF AAEGSVLSLG KMYHDMSTAG GLVAVALAHA LALAVAVAVA VNISGGHVNP AVTFGALVGG
101: RVSLVRAVLY WVAQLLGAVA ATLLLRLATG GMRPPGFALA SGVGDWHAVL LEAVMTFGLM YAYYATVIDP KRGHVGTIAP LAVGFLLGAN VLAGGPFDGA
201: GMNPARVFGP ALVGWRWRHH WVYWLGPFLG AGLAGLVYEY LVIPSADAAV PHAHQPLAPE DY

Best Arabidopsis Sequence Match ( AT1G17810.1 )
(BLAST)

001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAG EGSILALDKL YWDTAAHTGT NTPGGLVLVA LAHALALFAA VSAAINVSGG HVNPAVTFAA
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY

Arabidopsis Description

TIP3-2BETA-TIP [Source:UniProtKB/TrEMBL;Acc:A0A178WI57]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.