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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:golgi, mitochondrion, plasma membrane, plastid
MultiLoc:golgi
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plastid
 golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G165400.1
TraesCS1A01G340600.1
TraesCS1B01G182200.1
TraesCS1D01G175200.1
TraesCS1D01G342600.1
TraesCS2A01G374400.1
TraesCS2B01G391400.1
TraesCS2D01G370800.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G73190.1 TraesCS1A01G165400.1 AT1G73190.1 23163742
AT1G73190.1 TraesCS1B01G182200.1 AT1G73190.1 23163742
AT1G73190.1 TraesCS1D01G175200.1 AT1G73190.1 23163742
AT1G73190.1 TraesCS2A01G374400.1 AT1G73190.1 23163742
AT1G73190.1 TraesCS2B01G391400.1 AT1G73190.1 23163742
AT1G73190.1 TraesCS2D01G370800.1 AT1G73190.1 23163742
AT1G73190.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT1G73190.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT1G73190.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT1G73190.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT1G73190.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT1G73190.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT1G73190.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT1G73190.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G175200.1 Wheat unclear 98.86 98.86
HORVU1Hr1G043890.2 Barley mitochondrion 98.48 98.48
TraesCS1A01G165400.1 Wheat golgi, mitochondrion, plasma membrane, plastid 98.1 98.1
Os10t0492600-01 Rice plastid 88.21 87.88
Zm00001d013956_P003 Maize plasma membrane 86.31 86.64
EER94020 Sorghum golgi, mitochondrion, plasma membrane 84.03 83.08
Zm00001d032610_P003 Maize mitochondrion, plastid 82.13 81.2
GSMUA_Achr4P26010_001 Banana cytosol, golgi, plasma membrane 74.14 76.77
GSMUA_Achr2P10640_001 Banana cytosol, golgi, plasma membrane 71.1 73.62
CDX72962 Canola plasma membrane 64.64 64.15
CDX96453 Canola cytosol 64.64 64.15
VIT_16s0039g00220.t01 Wine grape cytosol 63.12 64.09
CDY66321 Canola plasma membrane 64.64 63.91
AT1G73190.1 Thale cress plasma membrane 65.02 63.81
Bra016014.1-P Field mustard cytosol 64.26 63.77
CDX68239 Canola cytosol 63.88 63.4
CDY11123 Canola cytosol 63.88 63.4
KRH34280 Soybean endoplasmic reticulum 60.84 62.99
CDY48045 Canola golgi, mitochondrion, plasma membrane 63.12 62.41
Bra008079.1-P Field mustard golgi, mitochondrion, plasma membrane 63.12 62.41
KRG92517 Soybean cytosol 60.08 62.2
KRH09321 Soybean cytosol, mitochondrion, plasma membrane 60.08 61.96
KRH38823 Soybean nucleus 60.08 61.96
AT1G17810.1 Thale cress cytosol, golgi, plasma membrane 61.6 60.67
PGSC0003DMT400069330 Potato cytosol 59.7 60.62
Solyc06g072130.2.1 Tomato extracellular 59.7 60.62
PGSC0003DMT400039507 Potato cytosol, golgi, plasma membrane 59.32 60.0
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 59.32 60.0
CDY19176 Canola plasma membrane 60.46 59.55
Bra025947.1-P Field mustard cytosol, golgi, plasma membrane 60.46 59.55
CDY26214 Canola plasma membrane 60.08 59.18
CDY21731 Canola golgi, mitochondrion, plasma membrane 59.7 58.8
Bra031005.1-P Field mustard golgi, mitochondrion, plasma membrane 59.7 58.8
CDX81850 Canola golgi, mitochondrion, plasma membrane 59.7 58.8
TraesCS2B01G391400.1 Wheat extracellular, plasma membrane, vacuole 57.03 56.6
TraesCS3B01G608500.1 Wheat plasma membrane 53.61 55.95
TraesCS4B01G310900.1 Wheat unclear 51.71 54.4
TraesCS2B01G433200.1 Wheat plasma membrane 46.01 48.79
TraesCS7B01G243000.1 Wheat plasma membrane 45.63 48.39
TraesCS3B01G182200.1 Wheat endoplasmic reticulum, extracellular, vacuole 46.01 48.21
TraesCS6B01G275100.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 44.87 47.39
TraesCS3B01G182400.1 Wheat plasma membrane 39.92 42.34
TraesCS4B01G349500.1 Wheat plasma membrane 37.26 38.43
TraesCS2B01G433300.1 Wheat endoplasmic reticulum 33.08 35.08
TraesCS5B01G570800.1 Wheat golgi, peroxisome, plasma membrane 32.32 30.14
TraesCS7B01G003800.1 Wheat golgi, peroxisome, plasma membrane 32.7 29.76
TraesCS6B01G398000.1 Wheat extracellular 14.45 29.69
TraesCS2B01G396800.1 Wheat golgi 32.32 29.31
TraesCS7B01G002000.1 Wheat golgi, peroxisome, plasma membrane 31.56 29.23
TraesCS4B01G362300.1 Wheat golgi, peroxisome, plasma membrane 32.32 29.11
TraesCS7B01G003900.1 Wheat golgi, peroxisome, plasma membrane 31.94 28.87
TraesCS5B01G567600.1 Wheat golgi, peroxisome, plasma membrane 31.94 28.87
TraesCS2B01G396700.2 Wheat plasma membrane 32.32 28.81
TraesCS5B01G567500.1 Wheat golgi, peroxisome, plasma membrane 31.56 28.72
TraesCS2B01G225900.1 Wheat golgi 31.18 28.28
TraesCS6B01G259000.1 Wheat golgi, peroxisome, plasma membrane 30.04 27.62
TraesCS2B01G077700.1 Wheat plasma membrane 29.66 27.46
TraesCS6B01G114400.1 Wheat golgi, peroxisome, plasma membrane 30.8 27.46
TraesCS6B01G450000.1 Wheat unclear 30.04 27.05
TraesCS6B01G450200.1 Wheat plastid 30.04 27.05
TraesCS5B01G178700.1 Wheat plasma membrane 30.04 27.05
TraesCS5B01G332500.1 Wheat plasma membrane 29.66 26.8
TraesCS6B01G279200.1 Wheat plastid 29.28 26.55
TraesCS2B01G425600.1 Wheat golgi, plasma membrane 28.9 26.39
TraesCS2B01G605900.1 Wheat golgi, peroxisome, plasma membrane 28.52 25.95
TraesCS7B01G096000.1 Wheat golgi, peroxisome, plasma membrane 26.24 22.7
TraesCS4B01G027600.1 Wheat plasma membrane 24.71 22.34
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3InterPro:Aquaporin-likeInterPro:Aquaporin_transptrGO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085
InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221
PANTHER:PTHR19139PANTHER:PTHR19139:SF132SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixEnsemblPlantsGene:TraesCS1B01G182200
EnsemblPlants:TraesCS1B01G182200.1TIGR:cd00333SEG:seg:::
Description
No Description!
Coordinates
chr1B:-:329202234..329203264
Molecular Weight (calculated)
27557.6 Da
IEP (calculated)
8.791
GRAVY (calculated)
0.557
Length
263 amino acids
Sequence
(BLAST)
001: MSTAARTTGR RGFTMGRSED ATHPDTIRAA ISEFLATAIF VFAAEGSILS LGKLYHDMST AGGLVAVALA HALALAVAVS VAVNISGGHV NPAITFGALL
101: GGRITLVRAL FYWIAQLLGA IVASLLLRLT TGGMRPPGFS LASGVGDWHA VLLEAVMTFG LMYAYYATLI DPKRGHVGTI GPLAVGFLLG ANILAGGPFD
201: GAAMNPARVF GPALVGWRWR HHWAYWLGPF LGSGIAGLLY EYVVMPSTDT AAHAHQPLAP EDY
Best Arabidopsis Sequence Match ( AT1G73190.1 )
(BLAST)
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWEHAAHAGT NTPGGLILVA LAHAFALFAA VSAAINVSGG HVNPAVTFGA
101: LVGGRVTAIR AIYYWIAQLL GAILACLLLR LTTNGMRPVG FRLASGVGAV NGLVLEIILT FGLVYVVYST LIDPKRGSLG IIAPLAIGLI VGANILVGGP
201: FSGASMNPAR AFGPALVGWR WHDHWIYWVG PFIGSALAAL IYEYMVIPTE PPTHHAHGVH QPLAPEDY
Arabidopsis Description
TIP3-1Aquaporin TIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:P26587]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.