Factsheet for TraesCS6B01G279200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, peroxisome, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G065700.1
TraesCS2A01G198500.1
TraesCS2B01G077700.1
TraesCS2B01G225900.1
TraesCS2D01G063900.1
TraesCS2D01G206300.1
TraesCS5A01G316300.1
TraesCS5B01G316800.1
TraesCS5D01G322500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01620.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS5A01G316300.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5B01G316800.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5D01G322500.1	AT4G24090.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2A01G065700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2B01G077700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2D01G063900.1	AT4G35100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G245100.1	Wheat	golgi, peroxisome, plasma membrane	98.97	98.97
TraesCS6D01G227500.1	Wheat	golgi	98.97	98.97
HORVU6Hr1G064140.1	Barley	golgi, peroxisome, plasma membrane	98.62	98.62
Os02t0666200-01	Rice	plasma membrane	96.21	96.54
Zm00001d017526_P001	Maize	plasma membrane	94.48	94.81
EES07484	Sorghum	plasma membrane	94.48	94.81
EES11257	Sorghum	cytosol, peroxisome, plasma membrane	93.79	94.44
Zm00001d051403_P001	Maize	plasma membrane	94.83	94.18
Zm00001d002690_P001	Maize	plasma membrane	93.45	94.1
TraesCS2B01G425600.1	Wheat	golgi, plasma membrane	93.1	93.75
TraesCS6B01G398000.1	Wheat	extracellular	40.69	92.19
TraesCS2B01G605900.1	Wheat	golgi, peroxisome, plasma membrane	91.72	92.04
AT4G23400.1	Thale cress	plasma membrane	87.93	88.85
AT1G01620.1	Thale cress	golgi, peroxisome, plasma membrane	87.59	88.81
TraesCS5B01G178700.1	Wheat	plasma membrane	89.31	88.7
CDX89115	Canola	plasma membrane	68.62	88.44
TraesCS6B01G450000.1	Wheat	unclear	88.97	88.36
TraesCS6B01G450200.1	Wheat	plastid	88.97	88.36
AT4G00430.1	Thale cress	golgi, peroxisome, plasma membrane	87.24	88.15
CDX83385	Canola	cytosol, peroxisome, plasma membrane	86.9	88.11
Solyc01g094690.2.1	Tomato	nucleus	86.55	88.07
CDY10936	Canola	plasma membrane	86.9	87.8
CDX94185	Canola	plasma membrane	86.9	87.8
CDY18886	Canola	cytosol, peroxisome, plasma membrane	86.55	87.76
AT3G61430.1	Thale cress	plasma membrane	86.55	87.76
CDX95670	Canola	cytosol, peroxisome, plasma membrane	86.55	87.76
CDX74777	Canola	cytosol, peroxisome, plasma membrane	86.55	87.76
CDY27346	Canola	cytosol, peroxisome, plasma membrane	86.21	87.41
CDY37078	Canola	cytosol, peroxisome, plasma membrane	86.21	87.41
CDY38017	Canola	plasma membrane	86.21	87.41
CDY66912	Canola	extracellular	62.07	87.38
Solyc03g096290.2.1	Tomato	nucleus	85.86	87.06
CDX71738	Canola	plasma membrane	85.86	87.06
CDY51161	Canola	cytosol, peroxisome, plasma membrane	85.86	87.06
CDX90046	Canola	cytosol, peroxisome, plasma membrane	85.86	87.06
CDX74334	Canola	cytosol, peroxisome, plasma membrane	86.21	86.81
CDY07221	Canola	cytosol, peroxisome, plasma membrane	85.52	86.71
CDY48920	Canola	plasma membrane	85.52	86.71
CDX91911	Canola	cytosol, peroxisome, plasma membrane	85.86	86.46
Solyc12g056220.1.1	Tomato	plastid	85.17	85.76
Solyc08g008050.2.1	Tomato	peroxisome	84.14	85.02
Solyc08g081190.2.1	Tomato	plastid	83.79	84.97
CDY66913	Canola	cytosol, mitochondrion, nucleus	13.1	82.61
Bra039301.1-P	Field mustard	cytosol, peroxisome, plasma membrane	75.17	77.86
CDY15165	Canola	plastid	86.21	77.16
AT2G45960.3	Thale cress	golgi, peroxisome, plasma membrane	79.66	76.74
TraesCS2B01G077700.1	Wheat	plasma membrane	66.9	68.31
TraesCS2B01G225900.1	Wheat	golgi	66.55	66.55
TraesCS6B01G259000.1	Wheat	golgi, peroxisome, plasma membrane	65.52	66.43
TraesCS2B01G396800.1	Wheat	golgi	66.21	66.21
TraesCS2B01G396700.2	Wheat	plasma membrane	66.21	65.08
TraesCS5B01G570800.1	Wheat	golgi, peroxisome, plasma membrane	62.07	63.83
TraesCS7B01G002000.1	Wheat	golgi, peroxisome, plasma membrane	61.38	62.68
TraesCS5B01G567500.1	Wheat	golgi, peroxisome, plasma membrane	60.34	60.55
TraesCS7B01G003800.1	Wheat	golgi, peroxisome, plasma membrane	59.31	59.52
TraesCS7B01G003900.1	Wheat	golgi, peroxisome, plasma membrane	59.66	59.45
TraesCS5B01G567600.1	Wheat	golgi, peroxisome, plasma membrane	59.31	59.11
TraesCS4B01G362300.1	Wheat	golgi, peroxisome, plasma membrane	58.97	58.56
TraesCS5B01G332500.1	Wheat	plasma membrane	58.62	58.42
TraesCS6B01G114400.1	Wheat	golgi, peroxisome, plasma membrane	56.9	55.93
TraesCS7B01G096000.1	Wheat	golgi, peroxisome, plasma membrane	53.79	51.32
TraesCS4B01G027600.1	Wheat	plasma membrane	48.28	48.11
TraesCS7B01G243000.1	Wheat	plasma membrane	30.34	35.48
TraesCS3B01G608500.1	Wheat	plasma membrane	29.31	33.73
TraesCS6B01G275100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	28.62	33.33
TraesCS2B01G433200.1	Wheat	plasma membrane	28.28	33.06
TraesCS4B01G310900.1	Wheat	unclear	27.93	32.4
TraesCS3B01G182200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	26.55	30.68
TraesCS2B01G433300.1	Wheat	endoplasmic reticulum	25.86	30.24
TraesCS2B01G391400.1	Wheat	extracellular, plasma membrane, vacuole	27.59	30.19
TraesCS1B01G182200.1	Wheat	golgi	26.55	29.28
TraesCS3B01G182400.1	Wheat	plasma membrane	23.45	27.42
TraesCS4B01G349500.1	Wheat	plasma membrane	22.76	25.88

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF262	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G279200
EnsemblPlants:TraesCS6B01G279200.1	TIGR:cd00333	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:+:504584058..504586875

Molecular Weight (calculated)

30843.5 Da

IEP (calculated)

9.060

GRAVY (calculated)

0.348

Length

290 amino acids

Sequence
(BLAST)

001: MEGKEEDVRL GANRYSERQP IGTAAQGGGD DKDYKEPPPA PLFEPGELKS WSFYRAGIAE FIATFLFLYV TVLTVMGVSK SPSKCATVGI QGIAWSFGGM
101: IFALVYCTAG ISGGHINPAV TFGLFLARKL SLTRAVFYII MQCLGAICGA GVVKGFQQGL YMGNGGGANV VASGYTKGDG LGAEIIGTFV LVYTVFSATD
201: AKRNARDSHV PILAPLPIGF AVFLVHLATI PITGTGINPA RSLGAAIIYN KDHAWNDHWI FWVGPFVGAA LAAVYHQVII RAIPFNKSRS

Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)

001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS

Arabidopsis Description

PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.