Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 2
- golgi 1
- plasma membrane 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25810.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT2G25810.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT2G25810.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G163400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 94.82 | 96.75 |
| TraesCS3A01G434600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 90.44 | 95.78 |
| EES02191 | Sorghum | cytosol | 78.49 | 78.17 |
| Os01t0232000-00 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 78.09 | 78.09 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, vacuole | 71.31 | 71.89 |
| Zm00001d039293_P001 | Maize | plastid | 78.49 | 68.64 |
| HORVU3Hr1G031620.5 | Barley | nucleus, peroxisome, plastid | 84.06 | 66.35 |
| TraesCS3B01G182400.1 | Wheat | plasma membrane | 63.35 | 64.11 |
| KRH62059 | Soybean | cytosol, plasma membrane, vacuole | 59.76 | 60.98 |
| KRH52727 | Soybean | cytosol | 58.96 | 60.16 |
| AT2G25810.1 | Thale cress | cytosol, golgi, plasma membrane | 59.36 | 59.84 |
| TraesCS4B01G349500.1 | Wheat | plasma membrane | 60.16 | 59.22 |
| Bra034271.1-P | Field mustard | cytosol, plasma membrane, vacuole | 58.17 | 58.63 |
| CDX77009 | Canola | cytosol, plasma membrane, vacuole | 58.17 | 58.63 |
| PGSC0003DMT400024847 | Potato | extracellular, plasma membrane, vacuole | 56.97 | 57.89 |
| GSMUA_Achr9P06260_001 | Banana | cytosol, golgi, plasma membrane | 58.57 | 57.65 |
| Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 56.57 | 57.49 |
| CDY35336 | Canola | extracellular | 32.27 | 56.64 |
| GSMUA_Achr1P13800_001 | Banana | cytosol | 54.98 | 54.33 |
| TraesCS4B01G310900.1 | Wheat | unclear | 53.78 | 54.0 |
| TraesCS2B01G433200.1 | Wheat | plasma membrane | 49.4 | 50.0 |
| TraesCS6B01G275100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 49.4 | 49.8 |
| VIT_04s0008g03550.t01 | Wine grape | plasma membrane | 59.36 | 49.5 |
| TraesCS3B01G608500.1 | Wheat | plasma membrane | 49.4 | 49.21 |
| TraesCS1B01G182200.1 | Wheat | golgi | 48.21 | 46.01 |
| TraesCS7B01G243000.1 | Wheat | plasma membrane | 43.82 | 44.35 |
| TraesCS2B01G391400.1 | Wheat | extracellular, plasma membrane, vacuole | 43.03 | 40.75 |
| TraesCS2B01G433300.1 | Wheat | endoplasmic reticulum | 38.25 | 38.71 |
| TraesCS6B01G398000.1 | Wheat | extracellular | 16.73 | 32.81 |
| TraesCS2B01G225900.1 | Wheat | golgi | 35.46 | 30.69 |
| TraesCS5B01G570800.1 | Wheat | golgi, peroxisome, plasma membrane | 33.86 | 30.14 |
| TraesCS2B01G396800.1 | Wheat | golgi | 34.26 | 29.66 |
| TraesCS6B01G259000.1 | Wheat | golgi, peroxisome, plasma membrane | 33.47 | 29.37 |
| TraesCS2B01G077700.1 | Wheat | plasma membrane | 33.07 | 29.23 |
| TraesCS2B01G396700.2 | Wheat | plasma membrane | 34.26 | 29.15 |
| TraesCS5B01G567500.1 | Wheat | golgi, peroxisome, plasma membrane | 33.47 | 29.07 |
| TraesCS7B01G003800.1 | Wheat | golgi, peroxisome, plasma membrane | 33.47 | 29.07 |
| TraesCS7B01G002000.1 | Wheat | golgi, peroxisome, plasma membrane | 32.67 | 28.87 |
| TraesCS5B01G567600.1 | Wheat | golgi, peroxisome, plasma membrane | 33.47 | 28.87 |
| TraesCS7B01G003900.1 | Wheat | golgi, peroxisome, plasma membrane | 33.47 | 28.87 |
| TraesCS5B01G332500.1 | Wheat | plasma membrane | 33.47 | 28.87 |
| TraesCS4B01G362300.1 | Wheat | golgi, peroxisome, plasma membrane | 33.07 | 28.42 |
| TraesCS6B01G450000.1 | Wheat | unclear | 31.87 | 27.4 |
| TraesCS6B01G450200.1 | Wheat | plastid | 31.87 | 27.4 |
| TraesCS5B01G178700.1 | Wheat | plasma membrane | 31.87 | 27.4 |
| TraesCS6B01G114400.1 | Wheat | golgi, peroxisome, plasma membrane | 31.47 | 26.78 |
| TraesCS7B01G096000.1 | Wheat | golgi, peroxisome, plasma membrane | 32.27 | 26.64 |
| TraesCS6B01G279200.1 | Wheat | plastid | 30.68 | 26.55 |
| TraesCS2B01G425600.1 | Wheat | golgi, plasma membrane | 29.88 | 26.04 |
| TraesCS2B01G605900.1 | Wheat | golgi, peroxisome, plasma membrane | 29.88 | 25.95 |
| TraesCS4B01G027600.1 | Wheat | plasma membrane | 28.29 | 24.4 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF186 | SUPFAM:SSF81338 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS3B01G182200 | EnsemblPlants:TraesCS3B01G182200.1 |
| TIGR:cd00333 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:190926081..190926931
Molecular Weight (calculated)
25350.3 Da
IEP (calculated)
7.272
GRAVY (calculated)
0.888
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKFALGHHS EVTEAGCVRA VLAEAVLTFL FVFSGVGSVM AAGRLAGGAD TIMGLTAVAL AHAMAVAVMV SAGLHVSGGH INPAVTLSLA AGGHITLFRS
101: ALYVLAQLLG SSLACLLLAF LTGGAVTMPV HALAAGVGAP QGVLWEAVLT FSLLFTVYAT VVDPRRSVGN LGPLLVGLVV GANVLAGGPF SGASMNPARS
201: FGPALASANW ASQWVYWVGP MVGGLLAGLV YEGLFMVRPG HQQLPTDGTD F
101: ALYVLAQLLG SSLACLLLAF LTGGAVTMPV HALAAGVGAP QGVLWEAVLT FSLLFTVYAT VVDPRRSVGN LGPLLVGLVV GANVLAGGPF SGASMNPARS
201: FGPALASANW ASQWVYWVGP MVGGLLAGLV YEGLFMVRPG HQQLPTDGTD F
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
Arabidopsis Description
TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [cytosol,plasma membrane,golgi]
SUBAcon: [cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.