Factsheet for Zm00001d039293_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016570_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25810.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT2G25810.1	Zm00001d050563_P001	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02191	Sorghum	cytosol	83.28	94.84
Os01t0232000-00	Rice	cytosol, endoplasmic reticulum, plasma membrane	72.13	82.47
TraesCS3D01G163400.1	Wheat	endoplasmic reticulum, extracellular, vacuole	67.94	79.27
TraesCS3B01G182200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	68.64	78.49
TraesCS3A01G434600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	64.81	78.48
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	62.02	71.49
KRH62059	Soybean	cytosol, plasma membrane, vacuole	54.01	63.01
KRH52727	Soybean	cytosol	52.96	61.79
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	52.61	61.13
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	51.92	60.32
AT2G25810.1	Thale cress	cytosol, golgi, plasma membrane	52.26	60.24
Bra034271.1-P	Field mustard	cytosol, plasma membrane, vacuole	51.92	59.84
Zm00001d039713_P001	Maize	plasma membrane	51.92	59.84
CDX77009	Canola	cytosol, plasma membrane, vacuole	51.92	59.84
Zm00001d015518_P001	Maize	endoplasmic reticulum, extracellular	21.6	58.49
Zm00001d019676_P001	Maize	endoplasmic reticulum, extracellular, plastid	21.6	58.49
Zm00001d037779_P001	Maize	cytosol, plasma membrane, vacuole	51.22	57.65
HORVU3Hr1G031620.5	Barley	nucleus, peroxisome, plastid	63.41	57.23
GSMUA_Achr9P06260_001	Banana	cytosol, golgi, plasma membrane	50.52	56.86
CDY35336	Canola	extracellular	28.22	56.64
Zm00001d020747_P001	Maize	extracellular	20.56	55.14
GSMUA_Achr1P13800_001	Banana	cytosol	47.39	53.54
VIT_04s0008g03550.t01	Wine grape	plasma membrane	54.36	51.83
Zm00001d027652_P001	Maize	plasma membrane	44.95	51.6
Zm00001d051362_P001	Maize	plasma membrane	44.25	51.0
Zm00001d002738_P001	Maize	plasma membrane	43.21	50.0
Zm00001d011778_P001	Maize	plasma membrane	43.9	49.61
Zm00001d017485_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	43.21	49.6
Zm00001d026177_P001	Maize	extracellular	42.86	49.6
Zm00001d010410_P001	Maize	plasma membrane, plastid	52.26	48.23
Zm00001d032610_P003	Maize	mitochondrion, plastid	44.6	48.12
Zm00001d013956_P003	Maize	plasma membrane	43.9	48.09
Zm00001d002952_P001	Maize	plasma membrane	39.72	43.02
Zm00001d026178_P002	Maize	plastid	34.49	37.08
Zm00001d014285_P001	Maize	plasma membrane	29.62	30.04
Zm00001d048520_P014	Maize	mitochondrion	27.18	29.1
Zm00001d019565_P001	Maize	plasma membrane	28.57	28.47
Zm00001d005421_P001	Maize	plasma membrane	28.92	28.42
Zm00001d003006_P001	Maize	plasma membrane	28.22	28.42
Zm00001d005410_P001	Maize	plasma membrane	28.22	28.32
Zm00001d017288_P001	Maize	plasma membrane	28.22	28.12
Zm00001d051174_P002	Maize	plasma membrane	28.22	28.03
Zm00001d019563_P006	Maize	plasma membrane	28.22	27.93
Zm00001d022608_P001	Maize	plasma membrane	26.48	26.39
Zm00001d051872_P001	Maize	plasma membrane	26.13	26.04
Zm00001d002690_P001	Maize	plasma membrane	26.13	26.04
Zm00001d051403_P001	Maize	plasma membrane	26.13	25.68
Zm00001d017526_P001	Maize	plasma membrane	25.78	25.61

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	UniProt:A0A1D6MF11	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0015840	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	ProteinID:ONM28220.1
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF186	SUPFAM:SSF81338
TMHMM:TMhelix	UniParc:UPI00022129BA	EnsemblPlantsGene:Zm00001d039293	EnsemblPlants:Zm00001d039293_P001	EnsemblPlants:Zm00001d039293_T001	SEG:seg

Description

tonoplast intrinsic protein4 tonoplast intrinsic protein4

Coordinates

chr3:-:1167223..1168320

Molecular Weight (calculated)

29326.1 Da

IEP (calculated)

9.124

GRAVY (calculated)

0.695

Length

287 amino acids

Sequence
(BLAST)

001: MYPSPPPHLF YGVSVSRQHS PRSNRHFFNP LAKRAMAKFA LGHHREASDA GCVRAVLAEL ILTFLFVFAG VGSAMATGKL AGGGGDTVVG LTAVALAHTL
101: VVAVMVSAGL HVSGGHINPA VTLGLAATGR ITLFRSALYV AAQLLGSTLA CLLLAFLAVA DSGVPVHALG AGVGALRGVL MEAVLTFSLL FAVYATVVDP
201: RRAVGGMGPL LVGLVVGANV LAGGPFSGAS MNPARSFGPA LVAGVWADHW VYWVGPLIGG PLAGLVYDGL FMAQGGHEPL PRDDTDF

Best Arabidopsis Sequence Match ( AT2G25810.1 )
(BLAST)

001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN

Arabidopsis Description

TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.