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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • vacuole 3
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra008079.1-P
Bra012567.1-P
Bra013361.1-P
Bra016014.1-P
Bra020182.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G73190.1 Bra008079.1-P AT1G73190.1 23163742
AT1G73190.1 Bra016014.1-P AT1G73190.1 23163742
AT1G73190.1 Bra027174.1-P AT3G16310.1 21798944
AT1G73190.1 Bra012567.1-P AT4G19030.1 21798944
AT1G73190.1 Bra013361.1-P AT4G19030.1 21798944
AT1G73190.1 Bra002403.1-P AT5G22290.1 21798944
AT1G73190.1 Bra006619.1-P AT5G22290.1 21798944
AT1G73190.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96453 Canola cytosol 98.87 98.87
CDX72962 Canola plasma membrane 98.49 98.49
Bra008079.1-P Field mustard golgi, mitochondrion, plasma membrane 90.94 90.6
AT1G73190.1 Thale cress plasma membrane 90.57 89.55
Bra025947.1-P Field mustard cytosol, golgi, plasma membrane 82.26 81.65
Bra031005.1-P Field mustard golgi, mitochondrion, plasma membrane 81.89 81.27
VIT_16s0039g00220.t01 Wine grape cytosol 70.19 71.81
KRH09321 Soybean cytosol, mitochondrion, plasma membrane 69.06 71.76
KRH38823 Soybean nucleus 68.3 70.98
Solyc06g072130.2.1 Tomato extracellular 69.06 70.66
PGSC0003DMT400069330 Potato cytosol 68.3 69.88
GSMUA_Achr4P26010_001 Banana cytosol, golgi, plasma membrane 66.42 69.29
KRH34280 Soybean endoplasmic reticulum 66.04 68.9
GSMUA_Achr2P10640_001 Banana cytosol, golgi, plasma membrane 64.91 67.72
KRG92517 Soybean cytosol 64.15 66.93
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 65.28 66.54
PGSC0003DMT400039507 Potato cytosol, golgi, plasma membrane 64.91 66.15
HORVU1Hr1G043890.2 Barley mitochondrion 64.15 64.64
TraesCS1D01G175200.1 Wheat unclear 64.15 64.64
TraesCS1B01G182200.1 Wheat golgi 63.77 64.26
TraesCS1A01G165400.1 Wheat golgi, mitochondrion, plasma membrane, plastid 63.77 64.26
Os10t0492600-01 Rice plastid 62.26 62.5
Zm00001d013956_P003 Maize plasma membrane 61.13 61.83
Zm00001d032610_P003 Maize mitochondrion, plastid 61.51 61.28
EER94020 Sorghum golgi, mitochondrion, plasma membrane 60.75 60.53
Bra032937.1-P Field mustard plasma membrane 56.98 59.68
Bra025210.1-P Field mustard plasma membrane 56.23 58.89
Bra037415.1-P Field mustard cytosol 55.85 58.73
Bra017222.1-P Field mustard cytosol 55.47 58.57
Os04t0527900-01 Rice plastid 54.72 54.72
Bra021171.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 43.02 54.29
Bra027181.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 50.57 54.03
Bra022131.1-P Field mustard extracellular 41.51 53.92
TraesCS2A01G374400.1 Wheat plasma membrane 53.58 53.58
TraesCS2B01G391400.1 Wheat extracellular, plasma membrane, vacuole 53.58 53.58
Zm00001d002952_P001 Maize plasma membrane 53.58 53.58
TraesCS2D01G370800.1 Wheat plasma membrane 53.58 53.58
Bra001626.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 50.19 53.41
Bra026245.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 50.19 53.2
EES11105 Sorghum mitochondrion, plasma membrane 53.58 52.99
Bra034271.1-P Field mustard cytosol, plasma membrane, vacuole 48.68 51.81
Bra024943.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 47.17 49.8
EER95659 Sorghum mitochondrion 47.92 46.86
Bra018148.1-P Field mustard extracellular, plasma membrane, plastid 37.36 38.82
Zm00001d048520_P014 Maize mitochondrion 36.6 36.19
Bra005216.1-P Field mustard cytosol, golgi, plasma membrane 30.19 34.63
Bra006997.1-P Field mustard plasma membrane 33.96 31.36
Bra000974.1-P Field mustard cytosol, peroxisome, plasma membrane 33.58 30.9
Bra033248.1-P Field mustard cytosol, peroxisome, plasma membrane 33.21 30.77
Bra002462.1-P Field mustard cytosol 30.19 30.77
Bra032644.1-P Field mustard plasma membrane 33.21 30.77
Bra023102.1-P Field mustard plasma membrane 32.83 30.74
Bra023103.1-P Field mustard plasma membrane 32.83 30.53
Bra014437.1-P Field mustard plasma membrane 32.83 30.42
Bra007603.1-P Field mustard plasma membrane 32.83 30.42
Bra004950.1-P Field mustard cytosol, peroxisome, plasma membrane 32.83 30.42
Bra017697.1-P Field mustard cytosol 32.08 30.25
Bra011585.1-P Field mustard plasma membrane 32.08 30.25
Bra020238.1-P Field mustard plasma membrane 32.08 30.04
Bra019307.1-P Field mustard cytosol, peroxisome, plasma membrane 32.45 29.97
Bra006650.1-P Field mustard plasma membrane 32.08 29.82
Bra003196.1-P Field mustard plasma membrane 32.08 29.72
Bra034675.1-P Field mustard cytosol, peroxisome, plasma membrane 31.32 29.54
Bra000111.1-P Field mustard plasma membrane 32.08 29.51
Bra007100.1-P Field mustard plasma membrane 31.7 29.37
Bra005215.1-P Field mustard cytosol, peroxisome, plasma membrane 26.04 28.99
Bra039301.1-P Field mustard cytosol, peroxisome, plasma membrane 28.3 26.79
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlantsGene:Bra016014EnsemblPlants:Bra016014.1
EnsemblPlants:Bra016014.1-PGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:IPR023271UniProt:M4DHN7
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF30SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0002541CBFSEG:seg
Description
AT1G73190 (E=1e-118) ALPHA-TIP, TIP3;1 | TIP3;1; water channel
Coordinates
chrA07:+:19832846..19833896
Molecular Weight (calculated)
27999.1 Da
IEP (calculated)
7.085
GRAVY (calculated)
0.628
Length
265 amino acids
Sequence
(BLAST)
001: MAASTVRTYG FGRADEATHP DSLRATLAEF LSTFVFVFAA EGSILSLDKL YWDHAAHVGT NTPGGLVLVA LAHAFALFAA VSAAINVSGG HVNPAVTFGA
101: LIGGRISAIR AIYYWIAQLL GALLACLLLR LSTNGMRPVG FSLASGVKAH NGLVLEIILT FGLVYVVYST LIDPKRGSLG IIGPLAVGLI VGANILMGGP
201: FSGASMNPAR AFGPALVGWR WDDHWIYWVG PFIGGALAAF IYEFMVIPTE PPAHHTHQPL APEDY
Best Arabidopsis Sequence Match ( AT1G73190.1 )
(BLAST)
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWEHAAHAGT NTPGGLILVA LAHAFALFAA VSAAINVSGG HVNPAVTFGA
101: LVGGRVTAIR AIYYWIAQLL GAILACLLLR LTTNGMRPVG FRLASGVGAV NGLVLEIILT FGLVYVVYST LIDPKRGSLG IIAPLAIGLI VGANILVGGP
201: FSGASMNPAR AFGPALVGWR WHDHWIYWVG PFIGSALAAL IYEYMVIPTE PPTHHAHGVH QPLAPEDY
Arabidopsis Description
TIP3-1Aquaporin TIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:P26587]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.