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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, golgi

Predictor Summary:
  • plastid 1
  • vacuole 3
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, mitochondrion, plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
EpiLoc:vacuole
MultiLoc:golgi
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:mitochondrion
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra008079.1-P
Bra012567.1-P
Bra013361.1-P
Bra016014.1-P
Bra020182.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G73190.1 Bra008079.1-P AT1G73190.1 23163742
AT1G73190.1 Bra016014.1-P AT1G73190.1 23163742
AT1G73190.1 Bra027174.1-P AT3G16310.1 21798944
AT1G73190.1 Bra012567.1-P AT4G19030.1 21798944
AT1G73190.1 Bra013361.1-P AT4G19030.1 21798944
AT1G73190.1 Bra002403.1-P AT5G22290.1 21798944
AT1G73190.1 Bra006619.1-P AT5G22290.1 21798944
AT1G73190.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48045 Canola golgi, mitochondrion, plasma membrane 100.0 100.0
AT1G73190.1 Thale cress plasma membrane 93.61 92.91
Bra016014.1-P Field mustard cytosol 90.6 90.94
Bra031005.1-P Field mustard golgi, mitochondrion, plasma membrane 83.08 82.77
Bra025947.1-P Field mustard cytosol, golgi, plasma membrane 82.71 82.4
KRH09321 Soybean cytosol, mitochondrion, plasma membrane 70.3 73.33
KRH38823 Soybean nucleus 69.55 72.55
Solyc06g072130.2.1 Tomato extracellular 69.92 71.81
VIT_16s0039g00220.t01 Wine grape cytosol 69.92 71.81
PGSC0003DMT400069330 Potato cytosol 69.17 71.04
KRH34280 Soybean endoplasmic reticulum 67.29 70.47
KRG92517 Soybean cytosol 65.41 68.5
GSMUA_Achr4P26010_001 Banana cytosol, golgi, plasma membrane 64.29 67.32
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 65.79 67.31
GSMUA_Achr2P10640_001 Banana cytosol, golgi, plasma membrane 63.91 66.93
PGSC0003DMT400039507 Potato cytosol, golgi, plasma membrane 65.41 66.92
TraesCS1A01G165400.1 Wheat golgi, mitochondrion, plasma membrane, plastid 62.78 63.5
TraesCS1D01G175200.1 Wheat unclear 62.78 63.5
HORVU1Hr1G043890.2 Barley mitochondrion 62.78 63.5
TraesCS1B01G182200.1 Wheat golgi 62.41 63.12
Os10t0492600-01 Rice plastid 62.41 62.88
Zm00001d013956_P003 Maize plasma membrane 61.28 62.21
Zm00001d032610_P003 Maize mitochondrion, plastid 61.65 61.65
EER94020 Sorghum golgi, mitochondrion, plasma membrane 60.53 60.53
Bra032937.1-P Field mustard plasma membrane 57.14 60.08
Bra017222.1-P Field mustard cytosol 56.39 59.76
Bra025210.1-P Field mustard plasma membrane 56.39 59.29
Bra037415.1-P Field mustard cytosol 56.02 59.13
Bra022131.1-P Field mustard extracellular 42.48 55.39
Bra021171.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 42.86 54.29
Bra026245.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 50.75 54.0
Bra027181.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 50.0 53.63
Os04t0527900-01 Rice plastid 53.38 53.58
Bra001626.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 50.0 53.41
TraesCS2D01G370800.1 Wheat plasma membrane 51.88 52.08
Zm00001d002952_P001 Maize plasma membrane 51.88 52.08
TraesCS2A01G374400.1 Wheat plasma membrane 51.88 52.08
TraesCS2B01G391400.1 Wheat extracellular, plasma membrane, vacuole 51.88 52.08
EES11105 Sorghum mitochondrion, plasma membrane 52.26 51.87
Bra034271.1-P Field mustard cytosol, plasma membrane, vacuole 48.12 51.41
Bra024943.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 47.74 50.6
EER95659 Sorghum mitochondrion 46.62 45.76
Bra018148.1-P Field mustard extracellular, plasma membrane, plastid 36.47 38.04
Zm00001d048520_P014 Maize mitochondrion 36.09 35.82
Bra005216.1-P Field mustard cytosol, golgi, plasma membrane 30.83 35.5
Bra002462.1-P Field mustard cytosol 31.95 32.69
Bra006997.1-P Field mustard plasma membrane 34.96 32.4
Bra000974.1-P Field mustard cytosol, peroxisome, plasma membrane 34.59 31.94
Bra014437.1-P Field mustard plasma membrane 34.21 31.82
Bra023102.1-P Field mustard plasma membrane 33.83 31.8
Bra020238.1-P Field mustard plasma membrane 33.83 31.8
Bra006650.1-P Field mustard plasma membrane 33.83 31.58
Bra023103.1-P Field mustard plasma membrane 33.83 31.58
Bra033248.1-P Field mustard cytosol, peroxisome, plasma membrane 33.83 31.47
Bra032644.1-P Field mustard plasma membrane 33.83 31.47
Bra007603.1-P Field mustard plasma membrane 33.83 31.47
Bra004950.1-P Field mustard cytosol, peroxisome, plasma membrane 33.83 31.47
Bra011585.1-P Field mustard plasma membrane 33.08 31.32
Bra017697.1-P Field mustard cytosol 32.71 30.96
Bra000111.1-P Field mustard plasma membrane 33.46 30.9
Bra019307.1-P Field mustard cytosol, peroxisome, plasma membrane 33.08 30.66
Bra034675.1-P Field mustard cytosol, peroxisome, plasma membrane 32.33 30.61
Bra005215.1-P Field mustard cytosol, peroxisome, plasma membrane 26.69 29.83
Bra007100.1-P Field mustard plasma membrane 31.95 29.72
Bra003196.1-P Field mustard plasma membrane 31.95 29.72
Bra039301.1-P Field mustard cytosol, peroxisome, plasma membrane 29.32 27.86
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlantsGene:Bra008079EnsemblPlants:Bra008079.1
EnsemblPlants:Bra008079.1-PGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:IPR023271UniProt:M4CV34
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF30SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI000254559ASEG:seg
Description
AT1G73190 (E=7e-120) ALPHA-TIP, TIP3;1 | TIP3;1; water channel
Coordinates
chrA02:+:13022347..13023295
Molecular Weight (calculated)
28001.0 Da
IEP (calculated)
7.343
GRAVY (calculated)
0.564
Length
266 amino acids
Sequence
(BLAST)
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWDHAAHAGT NTPGGLVLAA LAHAFALFAA VSAAANVSGG HANPAVTFGA
101: LIGGRLSAIR AIYYWIAQLL GAILACLLLR LATNGMRPVG FRLASGVGAV NGLVLEIILT FGLVYVVYST MIDPKRGSLG VIGPLAIGLI VGANILVGGQ
201: FSGASMNPAR AFGPALVGWR WDDHWIYWVG PFIGGALAAL IYEYMVIPTE PPTQHTHHQP LAPEDY
Best Arabidopsis Sequence Match ( AT1G73190.1 )
(BLAST)
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWEHAAHAGT NTPGGLILVA LAHAFALFAA VSAAINVSGG HVNPAVTFGA
101: LVGGRVTAIR AIYYWIAQLL GAILACLLLR LTTNGMRPVG FRLASGVGAV NGLVLEIILT FGLVYVVYST LIDPKRGSLG IIAPLAIGLI VGANILVGGP
201: FSGASMNPAR AFGPALVGWR WHDHWIYWVG PFIGSALAAL IYEYMVIPTE PPTHHAHGVH QPLAPEDY
Arabidopsis Description
TIP3-1Aquaporin TIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:P26587]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.