Factsheet for PGSC0003DMT400039507

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

plastid 1
vacuole 2
golgi 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400039507
PGSC0003DMT400050482
PGSC0003DMT400069330
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73190.1	PGSC0003DMT400039507	AT1G73190.1	23163742
AT1G73190.1	PGSC0003DMT400069330	AT1G73190.1	23163742
AT1G73190.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT1G73190.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G73190.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G73190.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G73190.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	99.62	99.62
PGSC0003DMT400069330	Potato	cytosol	82.31	82.63
VIT_16s0039g00220.t01	Wine grape	cytosol	71.15	71.43
AT1G17810.1	Thale cress	cytosol, golgi, plasma membrane	70.0	68.16
GSMUA_Achr2P10640_001	Banana	cytosol, golgi, plasma membrane	66.54	68.11
GSMUA_Achr4P26010_001	Banana	cytosol, golgi, plasma membrane	66.15	67.72
KRH09321	Soybean	cytosol, mitochondrion, plasma membrane	66.15	67.45
KRH38823	Soybean	nucleus	65.77	67.06
KRH34280	Soybean	endoplasmic reticulum	65.0	66.54
CDX81850	Canola	golgi, mitochondrion, plasma membrane	67.69	65.92
KRG92517	Soybean	cytosol	64.23	65.75
CDY11123	Canola	cytosol	66.92	65.66
CDX68239	Canola	cytosol	66.92	65.66
CDY21731	Canola	golgi, mitochondrion, plasma membrane	67.31	65.54
Bra031005.1-P	Field mustard	golgi, mitochondrion, plasma membrane	67.31	65.54
CDY48045	Canola	golgi, mitochondrion, plasma membrane	66.92	65.41
CDY66321	Canola	plasma membrane	66.92	65.41
Bra008079.1-P	Field mustard	golgi, mitochondrion, plasma membrane	66.92	65.41
CDY19176	Canola	plasma membrane	66.92	65.17
Bra025947.1-P	Field mustard	cytosol, golgi, plasma membrane	66.92	65.17
AT1G73190.1	Thale cress	plasma membrane	66.92	64.93
Bra016014.1-P	Field mustard	cytosol	66.15	64.91
CDX72962	Canola	plasma membrane	66.15	64.91
CDY26214	Canola	plasma membrane	66.54	64.79
CDX96453	Canola	cytosol	65.77	64.53
EER94020	Sorghum	golgi, mitochondrion, plasma membrane	64.23	62.78
Zm00001d032610_P003	Maize	mitochondrion, plastid	63.46	62.03
Zm00001d013956_P003	Maize	plasma membrane	62.31	61.83
PGSC0003DMT400072432	Potato	cytosol	57.31	60.08
HORVU1Hr1G043890.2	Barley	mitochondrion	60.38	59.7
TraesCS1A01G165400.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	60.38	59.7
TraesCS1D01G175200.1	Wheat	unclear	60.38	59.7
Os10t0492600-01	Rice	plastid	60.38	59.47
TraesCS1B01G182200.1	Wheat	golgi	60.0	59.32
PGSC0003DMT400077927	Potato	cytosol, plasma membrane, plastid, vacuole	53.46	54.94
Os04t0527900-01	Rice	plastid	55.38	54.34
TraesCS2D01G370800.1	Wheat	plasma membrane	54.62	53.58
Zm00001d002952_P001	Maize	plasma membrane	54.62	53.58
TraesCS2A01G374400.1	Wheat	plasma membrane	54.23	53.21
TraesCS2B01G391400.1	Wheat	extracellular, plasma membrane, vacuole	53.85	52.83
PGSC0003DMT400018375	Potato	cytosol	50.77	52.8
EES11105	Sorghum	mitochondrion, plasma membrane	54.23	52.61
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	50.38	52.4
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	49.62	52.02
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	48.85	51.0
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	46.92	49.0
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	43.85	46.15
EER95659	Sorghum	mitochondrion	46.92	45.02
PGSC0003DMT400038394	Potato	plastid	42.69	44.22
PGSC0003DMT400053882	Potato	extracellular	26.15	34.69
Zm00001d048520_P014	Maize	mitochondrion	34.62	33.58
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	30.77	31.87
PGSC0003DMT400027154	Potato	plasma membrane	31.92	29.54
PGSC0003DMT400000151	Potato	cytosol, peroxisome, plasma membrane	31.54	28.77
PGSC0003DMT400053877	Potato	plasma membrane	30.77	28.67
PGSC0003DMT400053479	Potato	plasma membrane	30.77	27.97
PGSC0003DMT400015824	Potato	plasma membrane	30.38	27.92
PGSC0003DMT400012780	Potato	cytosol, peroxisome, plasma membrane	30.77	27.78
PGSC0003DMT400020870	Potato	plasma membrane	30.38	27.53
PGSC0003DMT400014809	Potato	peroxisome	30.38	27.53
PGSC0003DMT400062174	Potato	plasma membrane	30.0	27.27
PGSC0003DMT400032134	Potato	cytosol, peroxisome, plasma membrane	30.0	27.27
PGSC0003DMT400068708	Potato	plasma membrane	28.85	26.5
PGSC0003DMT400064008	Potato	extracellular	11.15	25.89
PGSC0003DMT400053881	Potato	plasma membrane	30.38	25.73
PGSC0003DMT400060322	Potato	mitochondrion	25.77	24.36

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102602512	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M1B8D8	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400015275	PGSC:PGSC0003DMG400015275	EnsemblPlants:PGSC0003DMT400039507	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF30	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000295293F
RefSeq:XP_006351524.1	SEG:seg	:	:	:	:

Description

Aquaporin, MIP family, TIP subfamily [Source:PGSC_GENE;Acc:PGSC0003DMG400015275]

Coordinates

chr3:+:50267048..50268315

Molecular Weight (calculated)

27779.8 Da

IEP (calculated)

9.222

GRAVY (calculated)

0.488

Length

260 amino acids

Sequence
(BLAST)

001: MAMPARRYAF GRADEATHPD SMRATLSELL STFIFVFAGE GSVLAIDKLY PDTGLGSSRL IVIALAHAFS FFAAVASSLN VSGGHINPAV TFGSLVGGRI
101: SVVRAIYYWV AQLFGSVLAS LLLRLATDGL RPRGFSVAAG VGNLNALVME IVMTFGLMYT VYATAVDPRR GSLSTIAPLA IAFILGANTL VGGPFEGASM
201: NPARAFGPAL VGWRWRNHWI YWLGPFVGAA LAGLIYEYGI IQHETVPRPT THQPLAPEDY

Best Arabidopsis Sequence Match ( AT1G17810.1 )
(BLAST)

001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAG EGSILALDKL YWDTAAHTGT NTPGGLVLVA LAHALALFAA VSAAINVSGG HVNPAVTFAA
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY

Arabidopsis Description

TIP3-2BETA-TIP [Source:UniProtKB/TrEMBL;Acc:A0A178WI57]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.