Factsheet for PGSC0003DMT400015824

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000151
PGSC0003DMT400012780
PGSC0003DMT400014809
PGSC0003DMT400020870
PGSC0003DMT400032134
PGSC0003DMT400053479
PGSC0003DMT400062174
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35100.1	PGSC0003DMT400000151	AT1G01620.1	21798944
AT4G35100.1	PGSC0003DMT400012780	AT1G01620.1	21798944
AT4G35100.1	PGSC0003DMT400014809	AT1G01620.1	21798944
AT4G35100.1	PGSC0003DMT400032134	AT1G01620.1	21798944
AT4G35100.1	PGSC0003DMT400053479	AT1G01620.1	21798944
AT4G35100.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT4G35100.1	PGSC0003DMT400020870	AT2G39010.1	21798944
AT4G35100.1	PGSC0003DMT400062174	AT2G39010.1	21798944
AT4G35100.1	PGSC0003DMT400000151	AT3G61430.1	21798944
AT4G35100.1	PGSC0003DMT400012780	AT3G61430.1	21798944
AT4G35100.1	PGSC0003DMT400014809	AT3G61430.1	21798944
AT4G35100.1	PGSC0003DMT400032134	AT3G61430.1	21798944
AT4G35100.1	PGSC0003DMT400053479	AT3G61430.1	21798944
AT4G35100.1	PGSC0003DMT400000151	AT4G00430.1	21798944
AT4G35100.1	PGSC0003DMT400012780	AT4G00430.1	21798944
AT4G35100.1	PGSC0003DMT400014809	AT4G00430.1	21798944
AT4G35100.1	PGSC0003DMT400032134	AT4G00430.1	21798944
AT4G35100.1	PGSC0003DMT400053479	AT4G00430.1	21798944
AT4G35100.1	PGSC0003DMT400000151	AT4G23400.1	21798944
AT4G35100.1	PGSC0003DMT400012780	AT4G23400.1	21798944
AT4G35100.1	PGSC0003DMT400014809	AT4G23400.1	21798944
AT4G35100.1	PGSC0003DMT400032134	AT4G23400.1	21798944
AT4G35100.1	PGSC0003DMT400053479	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111660.2.1	Tomato	nucleus	98.23	98.23
Bra017697.1-P	Field mustard	cytosol	88.34	88.97
CDX69112	Canola	plasma membrane	88.34	88.97
AT4G35100.1	Thale cress	plasma membrane	87.99	88.93
Bra011585.1-P	Field mustard	plasma membrane	87.99	88.61
CDY52648	Canola	plasma membrane	87.99	88.61
CDX76314	Canola	cytosol	87.28	87.9
CDY17511	Canola	plasma membrane	87.28	87.9
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	86.93	87.54
KRH60692	Soybean	mitochondrion	84.45	86.91
PGSC0003DMT400068708	Potato	plasma membrane	86.57	86.57
VIT_03s0038g02520.t01	Wine grape	plasma membrane	85.16	86.38
CDX72515	Canola	golgi, plasma membrane	77.03	85.83
GSMUA_Achr5P11480_001	Banana	plasma membrane	59.72	85.35
KRH51390	Soybean	plasma membrane	82.69	84.17
GSMUA_Achr2P11190_001	Banana	plasma membrane	83.39	83.99
GSMUA_Achr1P02360_001	Banana	unclear	81.27	81.56
Os04t0233400-01	Rice	plasma membrane	80.92	81.21
KRH16406	Soybean	extracellular	43.82	81.05
PGSC0003DMT400053882	Potato	extracellular	55.83	80.61
TraesCS2A01G065700.1	Wheat	golgi	78.45	78.17
TraesCS2D01G063900.1	Wheat	plasma membrane	78.45	78.17
TraesCS2B01G077700.1	Wheat	plasma membrane	78.45	78.17
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	68.9	77.69
PGSC0003DMT400053877	Potato	plasma membrane	75.97	77.06
PGSC0003DMT400027154	Potato	plasma membrane	75.62	76.16
PGSC0003DMT400062174	Potato	plasma membrane	75.97	75.17
PGSC0003DMT400020870	Potato	plasma membrane	75.97	74.91
GSMUA_Achr1P07460_001	Banana	extracellular	44.52	72.0
GSMUA_Achr1P26380_001	Banana	plasma membrane	70.32	70.82
PGSC0003DMT400053881	Potato	plasma membrane	75.97	70.03
PGSC0003DMT400053479	Potato	plasma membrane	68.9	68.18
PGSC0003DMT400014809	Potato	peroxisome	67.49	66.55
PGSC0003DMT400012780	Potato	cytosol, peroxisome, plasma membrane	67.14	65.97
PGSC0003DMT400032134	Potato	cytosol, peroxisome, plasma membrane	66.43	65.73
PGSC0003DMT400000151	Potato	cytosol, peroxisome, plasma membrane	65.72	65.26
PGSC0003DMT400060322	Potato	mitochondrion	60.42	62.18
HORVU2Hr1G010990.2	Barley	plasma membrane	68.9	61.32
PGSC0003DMT400064008	Potato	extracellular	21.2	53.57
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	32.86	37.5
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	32.86	37.35
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	32.16	36.4
PGSC0003DMT400072432	Potato	cytosol	31.8	36.29
PGSC0003DMT400018375	Potato	cytosol	31.1	35.2
PGSC0003DMT400077927	Potato	cytosol, plasma membrane, plastid, vacuole	31.45	35.18
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	30.74	34.94
PGSC0003DMT400069330	Potato	cytosol	29.33	32.05
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	27.56	31.58
PGSC0003DMT400039507	Potato	cytosol, golgi, plasma membrane	27.92	30.38
PGSC0003DMT400038394	Potato	plastid	25.09	28.29

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102602321	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0009506	GO:GO:0009719	GO:GO:0009737	GO:GO:0015250
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0046658	GO:GO:0055085	InterPro:IPR023271
UniProt:M1A6N2	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400006183	PGSC:PGSC0003DMG400006183
EnsemblPlants:PGSC0003DMT400015824	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF196	SUPFAM:SSF81338
TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI000294B800	RefSeq:XP_006359706.1	:	:

Description

Aquaporin [Source:PGSC_GENE;Acc:PGSC0003DMG400006183]

Coordinates

chr1:+:87631164..87632633

Molecular Weight (calculated)

30121.8 Da

IEP (calculated)

8.597

GRAVY (calculated)

0.545

Length

283 amino acids

Sequence
(BLAST)

001: MSKEVIEEGQ VQQHGKDYVD PPPAPLLDFA ELKLWSFHRA LIAEFIATLL FLYVTVATVI GHNKLNGADK CDGVGILGIA WAFGGMIFVL VYCTAGISGG
101: HINPAVTFGL FLARKVSLVR AVGYIIAQCL GAICGVGFVK AFMKHPYNAF GGGANFVQSG YSNGTALGAE IIGTFVLVYT VFSATDPKRS ARDSHIPVLA
201: PLPIGFAVFM VHLATIPITG TGINPARSFG AAVIADNKNV WDDQWIFWVG PFVGALLAAA YHQYILRAAA IKALGSFRSN ATN

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.