CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	secretory
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00178
KRH11076
KRH21197
KRH22653
KRH26664
KRH27918
KRH41192
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH59918
KRH65384
KRH66037
KRH75838
KRH76164
KRH77555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16850.1	KRH00178	AT1G01620.1	21798944
AT2G16850.1	KRH27918	AT1G01620.1	21798944
AT2G16850.1	KRH41192	AT1G01620.1	21798944
AT2G16850.1	KRH59918	AT1G01620.1	21798944
AT2G16850.1	KRH66037	AT1G01620.1	21798944
AT2G16850.1	KRH75838	AT1G01620.1	21798944
AT2G16850.1	KRH77555	AT1G01620.1	21798944
AT2G16850.1	KRH65384	AT3G60600.1	21798944
AT2G16850.1	KRH76164	AT3G60600.1	21798944
AT2G16850.1	KRH00178	AT4G00430.1	21798944
AT2G16850.1	KRH27918	AT4G00430.1	21798944
AT2G16850.1	KRH41192	AT4G00430.1	21798944
AT2G16850.1	KRH59918	AT4G00430.1	21798944
AT2G16850.1	KRH66037	AT4G00430.1	21798944
AT2G16850.1	KRH75838	AT4G00430.1	21798944
AT2G16850.1	KRH77555	AT4G00430.1	21798944
AT2G16850.1	KRH11076	AT4G19030.1	21798944
AT2G16850.1	KRH21197	AT4G19030.1	21798944
AT2G16850.1	KRH42923	AT4G19030.1	21798944
AT2G16850.1	KRH42926	AT4G19030.1	21798944
AT2G16850.1	KRH45251	AT4G19030.1	21798944
AT2G16850.1	KRH59035	AT4G19030.1	21798944
AT2G16850.1	KRH59036	AT4G19030.1	21798944
AT2G16850.1	KRH00178	AT4G23400.1	21798944
AT2G16850.1	KRH27918	AT4G23400.1	21798944
AT2G16850.1	KRH41192	AT4G23400.1	21798944
AT2G16850.1	KRH59918	AT4G23400.1	21798944
AT2G16850.1	KRH66037	AT4G23400.1	21798944
AT2G16850.1	KRH75838	AT4G23400.1	21798944
AT2G16850.1	KRH77555	AT4G23400.1	21798944
AT2G16850.1	KRH22653	AT5G22290.1	21798944
AT2G16850.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51390	Soybean	plasma membrane	96.36	95.32
VIT_03s0038g02520.t01	Wine grape	plasma membrane	93.09	91.76
GSMUA_Achr5P11480_001	Banana	plasma membrane	65.82	91.41
KRH16406	Soybean	extracellular	50.55	90.85
AT2G16850.1	Thale cress	plasma membrane	90.18	89.21
CDX69112	Canola	plasma membrane	90.18	88.26
Bra011585.1-P	Field mustard	plasma membrane	89.82	87.9
CDY52648	Canola	plasma membrane	89.82	87.9
Bra017697.1-P	Field mustard	cytosol	89.82	87.9
CDY17511	Canola	plasma membrane	89.45	87.54
CDX76314	Canola	cytosol	89.45	87.54
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	89.09	87.19
CDX72515	Canola	golgi, plasma membrane	80.0	86.61
GSMUA_Achr2P11190_001	Banana	plasma membrane	87.64	85.77
Solyc01g111660.2.1	Tomato	nucleus	88.0	85.51
PGSC0003DMT400015824	Potato	plasma membrane	86.91	84.45
GSMUA_Achr1P02360_001	Banana	unclear	86.18	84.04
Os04t0233400-01	Rice	plasma membrane	83.27	81.21
KRH29919	Soybean	mitochondrion	82.18	79.02
KRH25011	Soybean	mitochondrion	82.18	79.02
KRG91899	Soybean	plasma membrane	81.45	78.87
KRH70183	Soybean	mitochondrion	80.73	77.89
KRH08523	Soybean	plasma membrane	80.36	77.54
TraesCS2D01G063900.1	Wheat	plasma membrane	80.0	77.46
TraesCS2B01G077700.1	Wheat	plasma membrane	80.0	77.46
TraesCS2A01G065700.1	Wheat	golgi	80.0	77.46
KRH70184	Soybean	plasma membrane	80.0	77.19
KRH08522	Soybean	plasma membrane	80.0	77.19
KRH26410	Soybean	golgi, peroxisome, plasma membrane	80.0	76.66
KRH34875	Soybean	plasma membrane	81.45	75.68
KRH22889	Soybean	golgi, peroxisome, plasma membrane	78.91	75.61
KRG95980	Soybean	plasma membrane	76.36	73.68
GSMUA_Achr1P07460_001	Banana	extracellular	46.55	73.14
KRH67688	Soybean	plasma membrane	75.64	72.73
GSMUA_Achr1P26380_001	Banana	plasma membrane	72.36	70.82
KRH77555	Soybean	plasma membrane	68.0	65.38
KRH27918	Soybean	plasma membrane	68.0	65.38
KRH59918	Soybean	peroxisome	67.64	64.81
KRH31119	Soybean	endoplasmic reticulum	68.0	64.71
KRH66037	Soybean	golgi, peroxisome, plasma membrane	66.55	64.44
KRH14983	Soybean	mitochondrion	67.64	64.36
KRG97766	Soybean	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane	31.27	64.18
KRH00178	Soybean	golgi, peroxisome, plasma membrane	66.91	64.11
KRH41192	Soybean	endoplasmic reticulum	67.27	64.01
HORVU2Hr1G010990.2	Barley	plasma membrane	70.55	61.01
KRH73156	Soybean	golgi, peroxisome, plasma membrane	68.0	58.62
KRH75838	Soybean	golgi, peroxisome, plasma membrane	65.45	49.59
KRG93712	Soybean	plasma membrane, vacuole	35.27	40.93
KRH23420	Soybean	plasma membrane, vacuole	36.0	40.08
KRH09912	Soybean	endoplasmic reticulum, plasma membrane, vacuole	36.0	40.08
KRH44312	Soybean	extracellular	35.64	39.52
KRH47241	Soybean	mitochondrion	35.64	39.52
KRH77347	Soybean	mitochondrion	33.09	36.55
KRH28112	Soybean	mitochondrion	33.09	36.55
KRH70511	Soybean	cytosol	33.45	36.51
KRH01591	Soybean	cytosol	33.09	36.11
KRH67767	Soybean	mitochondrion	32.73	36.0
KRH23017	Soybean	cytosol, plasma membrane, vacuole	32.73	35.71
KRH10300	Soybean	endoplasmic reticulum, extracellular	20.73	35.62
KRG96046	Soybean	nucleus	31.64	34.8
KRH34280	Soybean	endoplasmic reticulum	32.0	34.65
KRH29856	Soybean	cytosol, plasma membrane, vacuole	31.64	34.52
KRH24847	Soybean	endoplasmic reticulum, plasma membrane, vacuole	30.55	34.29
KRH36204	Soybean	cytosol, extracellular, mitochondrion, plasma membrane	31.27	34.13
KRH19959	Soybean	mitochondrion	30.91	34.0
KRG92517	Soybean	cytosol	31.27	33.86
KRH52727	Soybean	cytosol	30.18	33.74
KRH62059	Soybean	cytosol, plasma membrane, vacuole	29.82	33.33
KRH09321	Soybean	cytosol, mitochondrion, plasma membrane	30.55	32.94
KRG90553	Soybean	extracellular	29.09	32.92
KRH38823	Soybean	nucleus	29.45	31.76
KRH23943	Soybean	plasma membrane	20.36	30.6
KRH39857	Soybean	plastid	24.73	26.98

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100306103	MapMan:24.3.1.2	UniProt:A0A0R0K972	EMBL:ACUP02002135	InterPro:Aquaporin-like
InterPro:Aquaporin_transptr	EnsemblPlantsGene:GLYMA_04G003200	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0015250
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271
EnsemblPlants:KRH60692	ProteinID:KRH60692	ProteinID:KRH60692.1	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF196	SUPFAM:SSF81338	TIGRFAMs:TIGR00861
TMHMM:TMhelix	UniParc:UPI0001B37F6E	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:266857..268299

Molecular Weight (calculated)

29303.0 Da

IEP (calculated)

9.736

GRAVY (calculated)

0.550

Length

275 amino acids

Sequence
(BLAST)

001: MSKEVSQQRK DYVDPPPAPL IDLAEIKLWS FYRALIAEFI ATLLFLYVTV ATVIGHKKQT GPCDGVGLLG IAWAFGGMIF VLVYCTAGIS GGHINPAVTF
101: GLFLARKVSL IRALFYMVAQ CLGAICGVGL VKAFMKHSYN SLGGGANSVS AGYNKGSALG AEIIGTFVLV YTVFSATDPK RSARDSHIPV LAPLPIGFAV
201: FMVHLATIPI TGTGINPARS FGAAVIYNNG KVWDDHWIFW VGPFVGALAA AAYHQYILRA AAIKALGSFR SNPTN

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.