Factsheet for GSMUA_Achr5P11480_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
nucleus 1
extracellular 3
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

plasma membrane: 25757388

gfp PMID: 25757388 doi

S Sreedharan, UK Shekhawat, TR Ganapathi

Plant Cell Culture Technology Section, Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, 400 085, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P02360_001
GSMUA_Achr1P07460_001
GSMUA_Achr1P20280_001
GSMUA_Achr1P26380_001
GSMUA_Achr2P11190_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P11480_001
GSMUA_Achr5P12400_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001
GSMUA_Achr8P11540_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16850.1	GSMUA_Achr5P12400_001	AT1G01620.1	21798944
AT2G16850.1	GSMUA_Achr8P11540_001	AT1G01620.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT2G16850.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT2G16850.1	GSMUA_Achr5P12400_001	AT4G00430.1	21798944
AT2G16850.1	GSMUA_Achr8P11540_001	AT4G00430.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT2G16850.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT2G16850.1	GSMUA_Achr5P12400_001	AT4G23400.1	21798944
AT2G16850.1	GSMUA_Achr8P11540_001	AT4G23400.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G23400.1	21798944
AT2G16850.1	GSMUA_AchrUn_...	AT4G23400.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT1G01620.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT1G01620.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT1G01620.1	21798944
AT4G35100.1	GSMUA_Achr1P02360_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr1P07460_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr1P26380_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr2P11190_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr5P11480_001	AT2G16850.1	21798944
AT4G35100.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT3G61430.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT3G61430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT3G61430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT3G61430.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT4G00430.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT4G00430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G00430.1	21798944
AT4G35100.1	GSMUA_Achr5P12400_001	AT4G23400.1	21798944
AT4G35100.1	GSMUA_Achr8P11540_001	AT4G23400.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G23400.1	21798944
AT4G35100.1	GSMUA_AchrUn_...	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P33990_001	Banana	extracellular	89.9	89.9
GSMUA_Achr4P20780_001	Banana	extracellular	83.84	84.69
GSMUA_Achr8P18910_001	Banana	extracellular	83.84	84.69
GSMUA_Achr8P33980_001	Banana	extracellular	84.85	84.42
GSMUA_Achr1P26390_001	Banana	endoplasmic reticulum, extracellular, plasma membrane, plastid	83.33	83.33
KRH16406	Soybean	extracellular	64.14	83.01
GSMUA_Achr11P...	Banana	extracellular	81.82	82.65
GSMUA_AchrUn_...	Banana	extracellular	80.81	82.05
GSMUA_Achr1P00370_001	Banana	extracellular	75.25	78.42
GSMUA_AchrUn_...	Banana	extracellular	74.75	77.89
GSMUA_AchrUn_...	Banana	extracellular	74.75	77.89
GSMUA_Achr2P03980_001	Banana	extracellular	74.24	77.37
GSMUA_Achr5P12400_001	Banana	extracellular	73.74	76.84
GSMUA_Achr8P11540_001	Banana	extracellular	73.74	76.84
GSMUA_Achr1P07460_001	Banana	extracellular	67.68	76.57
GSMUA_AchrUn_...	Banana	extracellular	73.23	76.32
GSMUA_Achr11P...	Banana	extracellular	76.26	70.56
GSMUA_Achr2P11190_001	Banana	plasma membrane	97.98	69.04
CDX72515	Canola	golgi, plasma membrane	88.38	68.9
GSMUA_Achr10P...	Banana	plasma membrane	74.24	68.69
GSMUA_Achr1P02360_001	Banana	unclear	95.45	67.02
KRH60692	Soybean	mitochondrion	91.41	65.82
VIT_03s0038g02520.t01	Wine grape	plasma membrane	92.42	65.59
KRH51390	Soybean	plasma membrane	90.4	64.39
AT2G16850.1	Thale cress	plasma membrane	88.89	63.31
AT4G35100.1	Thale cress	plasma membrane	88.38	62.5
CDX76314	Canola	cytosol	87.88	61.92
CDX69112	Canola	plasma membrane	87.88	61.92
Bra017697.1-P	Field mustard	cytosol	87.88	61.92
Bra011585.1-P	Field mustard	plasma membrane	87.37	61.57
CDY17511	Canola	plasma membrane	87.37	61.57
CDY52648	Canola	plasma membrane	87.37	61.57
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	86.87	61.21
TraesCS2D01G063900.1	Wheat	plasma membrane	86.36	60.21
TraesCS2A01G065700.1	Wheat	golgi	85.86	59.86
TraesCS2B01G077700.1	Wheat	plasma membrane	85.86	59.86
PGSC0003DMT400015824	Potato	plasma membrane	85.35	59.72
Solyc01g111660.2.1	Tomato	nucleus	84.85	59.36
PGSC0003DMT400068708	Potato	plasma membrane	83.84	58.66
Solyc10g055630.1.1	Tomato	nucleus, plastid	83.84	58.66
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	74.24	58.57
Solyc02g083510.2.1	Tomato	nucleus	75.76	57.92
GSMUA_Achr1P26380_001	Banana	plasma membrane	76.26	53.74
HORVU2Hr1G010990.2	Barley	plasma membrane	72.22	44.97
GSMUA_Achr9P28940_001	Banana	plasma membrane	37.37	30.2
GSMUA_Achr10P...	Banana	plasma membrane	37.88	29.76
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	36.36	29.63
GSMUA_Achr4P26010_001	Banana	cytosol, golgi, plasma membrane	37.37	29.13
GSMUA_Achr2P10640_001	Banana	cytosol, golgi, plasma membrane	37.37	29.13
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	36.36	28.8
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	35.35	28.57
GSMUA_Achr6P15380_001	Banana	cytosol, plasma membrane, vacuole	35.35	27.78
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	34.34	27.31
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	34.34	27.2
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, vacuole	33.84	26.91
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	33.84	26.91
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	33.84	26.8
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	32.83	25.9
GSMUA_Achr4P24600_001	Banana	golgi, plasma membrane, plastid	31.31	23.57
GSMUA_Achr9P06260_001	Banana	cytosol, golgi, plasma membrane	29.8	23.14
GSMUA_Achr1P13800_001	Banana	cytosol	29.29	22.83

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr5G11480_001	EnsemblPlants:GSMUA_Achr5P11480_001	EnsemblPlants:GSMUA_Achr5T11480_001	InterPro:IPR023271	UniProt:M0SXM7
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF196	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00029566E5	SEG:seg

Description

Probable aquaporin PIP2-6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G11480_001]

Coordinates

chr5:+:8226359..8227864

Molecular Weight (calculated)

20855.8 Da

IEP (calculated)

10.084

GRAVY (calculated)

0.630

Length

198 amino acids

Sequence
(BLAST)

001: MIFILVYCTA GISGGHINPA VTLGLFLARK VSLIRALLYM VAQCLGAIVG VGIVKGIMKH QYNSLGGGAN MVAAGYSKGT ALGAEIIGTF VLVYTVFSAT
101: DPKRSARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSLGAAVIY NQDKPWDDHW IFWVGPFVGA LAAAAYHQYI LRAAAIKALG SFRSNPTN

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.