Factsheet for Solyc02g083510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 3
extracellular 2
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	93.82	96.81
GSMUA_Achr5P11480_001	Banana	plasma membrane	57.92	75.76
VIT_03s0038g02520.t01	Wine grape	plasma membrane	78.76	73.12
Solyc09g007770.2.1	Tomato	nucleus	72.97	72.97
GSMUA_Achr1P02360_001	Banana	unclear	78.38	71.99
GSMUA_Achr2P11190_001	Banana	plasma membrane	77.61	71.53
Os04t0233400-01	Rice	plasma membrane	77.61	71.28
Solyc10g055630.1.1	Tomato	nucleus, plastid	77.61	71.02
TraesCS2D01G063900.1	Wheat	plasma membrane	77.61	70.77
TraesCS2B01G077700.1	Wheat	plasma membrane	77.61	70.77
TraesCS2A01G065700.1	Wheat	golgi	77.61	70.77
Solyc01g111660.2.1	Tomato	nucleus	76.45	69.96
Solyc10g084120.1.1	Tomato	nucleus	74.52	68.68
Solyc06g011350.2.1	Tomato	nucleus	72.97	67.5
GSMUA_Achr1P26380_001	Banana	plasma membrane	72.59	66.9
GSMUA_Achr1P07460_001	Banana	extracellular	45.17	66.86
Solyc11g069430.1.1	Tomato	plastid	72.2	65.16
Solyc08g081190.2.1	Tomato	plastid	70.27	63.64
Solyc03g096290.2.1	Tomato	nucleus	70.27	63.64
Solyc09g007760.2.1	Tomato	extracellular	73.75	62.42
Solyc08g008050.2.1	Tomato	peroxisome	68.73	62.02
Solyc12g056220.1.1	Tomato	plastid	68.73	61.81
Solyc01g094690.2.1	Tomato	nucleus	67.95	61.75
HORVU2Hr1G010990.2	Barley	plasma membrane	70.66	57.55
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	60.23	53.98
Solyc12g044330.1.1	Tomato	plastid	35.52	37.1
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	34.75	36.0
Solyc06g072130.2.1	Tomato	extracellular	33.98	33.98
Solyc10g083880.1.1	Tomato	plastid	32.43	33.87
Solyc06g066560.1.1	Tomato	mitochondrion	35.14	33.33
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	31.66	32.41
Solyc06g074820.2.1	Tomato	plastid	30.89	32.0
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	31.27	31.15
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	29.34	30.77
Solyc03g093230.2.1	Tomato	plastid	26.64	27.49

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833
GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220
GO:GO:0055085	InterPro:IPR023271	UniProt:K4BAL9	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF196	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc02g083510.2
EnsemblPlants:Solyc02g083510.2.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00027686A9	:	:

Description

No Description!

Coordinates

chr2:-:46878880..46881022

Molecular Weight (calculated)

27499.8 Da

IEP (calculated)

9.252

GRAVY (calculated)

0.642

Length

259 amino acids

Sequence
(BLAST)

001: MVKDYVDPPS APLFQTAELY NWSFYRALIA EFVATLLFLY VSVATVIGHK KQLGPCDGVG LVGIAWAFGG MIFVLVYSTA GISGGHINPA VTFGLLLARK
101: VSLLRAVAYM VAQCLGAICG VGLVKGVMKD DYTKHGGGAN TVAVGYSTGA ALGAEIIATF LLMYTVFSAT DAKRKARDSH VPVLAPLPIG FSVFMVHLAT
201: IPITGTGINP ARSFGAAVIY NDTTAWNDHW IFWVGPFLGA LAAVIYHQQI LRGHAAKAF

Best Arabidopsis Sequence Match ( AT2G16850.1 )
(BLAST)

001: MSKEVSEEGR HGKDYVDPPP APLLDMAELK LWSFYRAIIA EFIATLLFLY VTVATVIGHK NQTGPCGGVG LLGIAWAFGG MIFVLVYCTA GISGGHINPA
101: VTFGLFLARK VSLPRAVAYM VAQCLGAICG VGLVKAFMMT PYKRLGGGAN TVADGYSTGT ALGAEIIGTF VLVYTVFSAT DPKRSARDSH VPVLAPLPIG
201: FAVFMVHLAT IPITGTGINP ARSFGAAVIY NNEKAWDDHW IFWVGPFVGA LAAAAYHQYI LRAAAIKALA SFRSNPTN

Arabidopsis Description

PIP2-8Probable aquaporin PIP2-8 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.