Factsheet for PGSC0003DMT400068708

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g055630.1.1	Tomato	nucleus, plastid	97.53	97.53
PGSC0003DMT400015824	Potato	plasma membrane	86.57	86.57
VIT_03s0038g02520.t01	Wine grape	plasma membrane	84.45	85.66
GSMUA_Achr5P11480_001	Banana	plasma membrane	58.66	83.84
PGSC0003DMT400053882	Potato	extracellular	56.54	81.63
GSMUA_Achr2P11190_001	Banana	plasma membrane	80.92	81.49
PGSC0003DMT400053877	Potato	plasma membrane	78.45	79.57
GSMUA_Achr1P02360_001	Banana	unclear	79.15	79.43
Os04t0233400-01	Rice	plasma membrane	78.09	78.37
PGSC0003DMT400027154	Potato	plasma membrane	77.74	78.29
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	69.26	78.09
PGSC0003DMT400062174	Potato	plasma membrane	77.39	76.57
TraesCS2B01G077700.1	Wheat	plasma membrane	75.62	75.35
TraesCS2D01G063900.1	Wheat	plasma membrane	75.62	75.35
PGSC0003DMT400020870	Potato	plasma membrane	76.33	75.26
TraesCS2A01G065700.1	Wheat	golgi	75.27	75.0
PGSC0003DMT400053881	Potato	plasma membrane	77.74	71.66
GSMUA_Achr1P07460_001	Banana	extracellular	43.46	70.29
GSMUA_Achr1P26380_001	Banana	plasma membrane	68.2	68.68
PGSC0003DMT400053479	Potato	plasma membrane	68.2	67.48
PGSC0003DMT400012780	Potato	cytosol, peroxisome, plasma membrane	67.14	65.97
PGSC0003DMT400014809	Potato	peroxisome	66.43	65.51
PGSC0003DMT400000151	Potato	cytosol, peroxisome, plasma membrane	65.37	64.91
PGSC0003DMT400032134	Potato	cytosol, peroxisome, plasma membrane	65.37	64.69
PGSC0003DMT400060322	Potato	mitochondrion	61.13	62.91
HORVU2Hr1G010990.2	Barley	plasma membrane	67.84	60.38
PGSC0003DMT400064008	Potato	extracellular	20.85	52.68
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	33.22	37.75
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	32.86	37.5
PGSC0003DMT400072432	Potato	cytosol	31.45	35.89
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	31.45	35.6
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	31.1	35.34
PGSC0003DMT400018375	Potato	cytosol	30.74	34.8
PGSC0003DMT400077927	Potato	cytosol, plasma membrane, plastid, vacuole	30.39	33.99
PGSC0003DMT400069330	Potato	cytosol	29.33	32.05
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	26.86	30.77
PGSC0003DMT400039507	Potato	cytosol, golgi, plasma membrane	26.5	28.85
PGSC0003DMT400038394	Potato	plastid	25.09	28.29

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	ProteinID:ABC01884	ProteinID:ABC01884.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
EMBL:DQ294252	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M1CJE1
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400026718	PGSC:PGSC0003DMG400026718	EnsemblPlants:PGSC0003DMT400068708
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF196	SUPFAM:SSF81338	TIGRFAMs:TIGR00861
TMHMM:TMhelix	UniParc:UPI0002964AB5	:	:	:	:

Description

Plasma membrane intrinsic protein PIP2 [Source:PGSC_GENE;Acc:PGSC0003DMG400026718]

Coordinates

chr10:+:47386524..47388368

Molecular Weight (calculated)

30411.3 Da

IEP (calculated)

9.235

GRAVY (calculated)

0.470

Length

283 amino acids

Sequence
(BLAST)

001: MSKDVIEEGQ AHHHGKDYVD PPPAPLLDMA ELTKWSFYRA VIAEFIATLL FLYVTVATVI GHKKLNKLNQ CDGVGILGIA WAFGGMIFVL VYCTAGISGG
101: HINPAVTFGL FLARKVSLIR AVAYIIAQSL GAICGVGFVK LFMKHYYNAE GGGANFVQPG YNKGTALGAE IIGTFVLVYT VFSATDPKRS ARDSHVPVLA
201: PLPIGFAVFM VHLATIPITG TGINPARSFG AAVIYGNEKI WDDQWIFWVG PMVGAMAAAI YHQFVLRAGA VKALGSFRSN QTN

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.