Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 3
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042613 | Potato | cytosol, extracellular, plasma membrane | 79.12 | 79.12 |
| CDY63821 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 78.71 | 78.71 |
| CDX82410 | Canola | plasma membrane | 78.31 | 78.31 |
| CDY20190 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 78.31 | 78.31 |
| Bra027181.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 77.91 | 78.23 |
| CDY30146 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 77.91 | 78.23 |
| Bra001626.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 77.91 | 77.91 |
| CDX97733 | Canola | endoplasmic reticulum, extracellular | 77.51 | 77.82 |
| AT3G16240.1 | Thale cress | plasma membrane | 77.91 | 77.6 |
| PGSC0003DMT400068047 | Potato | cytosol, extracellular, plastid, vacuole | 77.11 | 77.42 |
| GSMUA_Achr6P05830_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 75.5 | 76.73 |
| GSMUA_Achr9P28940_001 | Banana | plasma membrane | 75.5 | 76.73 |
| Bra021171.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 64.66 | 76.67 |
| KRH09912 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 75.9 | 76.52 |
| KRH23420 | Soybean | plasma membrane, vacuole | 75.5 | 76.11 |
| KRG93712 | Soybean | plasma membrane, vacuole | 71.89 | 75.53 |
| Os06t0336200-01 | Rice | nucleus | 73.09 | 73.39 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid, vacuole | 70.28 | 72.02 |
| PGSC0003DMT400030994 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 72.0 |
| EER89797 | Sorghum | plasma membrane | 71.08 | 71.37 |
| CDY47816 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 71.15 |
| CDX75873 | Canola | extracellular, golgi, vacuole | 78.31 | 70.91 |
| HORVU7Hr1G081770.8 | Barley | plasma membrane | 69.88 | 69.88 |
| TraesCS7B01G243000.1 | Wheat | plasma membrane | 69.48 | 69.76 |
| TraesCS7A01G331300.1 | Wheat | unclear | 69.48 | 69.76 |
| VIT_09s0002g04020.t01 | Wine grape | plasma membrane, vacuole | 68.27 | 68.27 |
| PGSC0003DMT400072432 | Potato | cytosol | 61.04 | 61.29 |
| TraesCS7D01G339600.1 | Wheat | plasma membrane | 68.27 | 60.93 |
| PGSC0003DMT400018375 | Potato | cytosol | 56.22 | 56.0 |
| PGSC0003DMT400077927 | Potato | cytosol, plasma membrane, plastid, vacuole | 55.42 | 54.55 |
| PGSC0003DMT400024847 | Potato | extracellular, plasma membrane, vacuole | 47.39 | 47.77 |
| PGSC0003DMT400069330 | Potato | cytosol | 49.0 | 47.1 |
| PGSC0003DMT400038394 | Potato | plastid | 47.39 | 47.01 |
| PGSC0003DMT400039507 | Potato | cytosol, golgi, plasma membrane | 49.0 | 46.92 |
| PGSC0003DMT400053882 | Potato | extracellular | 29.32 | 37.24 |
| PGSC0003DMT400009240 | Potato | cytosol, extracellular, plasma membrane | 32.93 | 32.67 |
| PGSC0003DMT400053877 | Potato | plasma membrane | 35.74 | 31.9 |
| PGSC0003DMT400027154 | Potato | plasma membrane | 35.74 | 31.67 |
| PGSC0003DMT400068708 | Potato | plasma membrane | 35.34 | 31.1 |
| PGSC0003DMT400015824 | Potato | plasma membrane | 34.94 | 30.74 |
| PGSC0003DMT400020870 | Potato | plasma membrane | 34.94 | 30.31 |
| PGSC0003DMT400062174 | Potato | plasma membrane | 34.54 | 30.07 |
| PGSC0003DMT400000151 | Potato | cytosol, peroxisome, plasma membrane | 32.93 | 28.77 |
| PGSC0003DMT400053881 | Potato | plasma membrane | 35.34 | 28.66 |
| PGSC0003DMT400053479 | Potato | plasma membrane | 32.13 | 27.97 |
| PGSC0003DMT400032134 | Potato | cytosol, peroxisome, plasma membrane | 31.33 | 27.27 |
| PGSC0003DMT400014809 | Potato | peroxisome | 31.33 | 27.18 |
| PGSC0003DMT400012780 | Potato | cytosol, peroxisome, plasma membrane | 31.33 | 27.08 |
| PGSC0003DMT400064008 | Potato | extracellular | 12.05 | 26.79 |
| PGSC0003DMT400060322 | Potato | mitochondrion | 28.92 | 26.18 |
Protein Annotations
| Gene3D:1.20.1080.10 | EntrezGene:102596615 | MapMan:24.3.1.3 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0000326 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006833 | GO:GO:0008150 | GO:GO:0009505 | GO:GO:0009506 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009705 | GO:GO:0009941 | GO:GO:0015200 | GO:GO:0015250 |
| GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030312 | GO:GO:0042802 | GO:GO:0042807 |
| GO:GO:0055085 | InterPro:IPR023271 | UniProt:M0ZRL0 | InterPro:MIP | PFAM:PF00230 | EnsemblPlantsGene:PGSC0003DMG400002552 |
| PGSC:PGSC0003DMG400002552 | EnsemblPlants:PGSC0003DMT400006558 | PRINTS:PR00783 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF257 | SUPFAM:SSF81338 |
| TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI000294E9A0 | RefSeq:XP_006343095.1 | : | : |
Description
Delta TIP [Source:PGSC_GENE;Acc:PGSC0003DMG400002552]
Coordinates
chr3:-:59891573..59893134
Molecular Weight (calculated)
25162.8 Da
IEP (calculated)
6.329
GRAVY (calculated)
0.954
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGVAIGSF SDSFSVVSLK AYLAEFISTL IFVFAGVGSA IAYSKLTANA ALDPAGLVAI AVCHGFALFV AVSVSANISG GHVNPAVTCG LTFGGHITFI
101: TGSFYMLAQL TGAAVACFLL KFVTGGCAIP THGVGAGVGI IEGLVMEIII TFGLVYTVFA TAADPKKGSL GTIAPIAIGF IVGANILAAG PFSGGSMNPA
201: RSFGPAMATG NFEGFWIYWI GPLVGGSLAG LIYTNVFMQQ EHAPLSNEF
101: TGSFYMLAQL TGAAVACFLL KFVTGGCAIP THGVGAGVGI IEGLVMEIII TFGLVYTVFA TAADPKKGSL GTIAPIAIGF IVGANILAAG PFSGGSMNPA
201: RSFGPAMATG NFEGFWIYWI GPLVGGSLAG LIYTNVFMQQ EHAPLSNEF
001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF
Arabidopsis Description
TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.