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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:
  • nucleus 1
  • plastid 1
  • golgi 3
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 3
  • plasma membrane 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, vacuole
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:golgi
Predotar:mitochondrion
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68239
CDX72962
CDX75873
CDX78177
CDX78905
CDX82410
CDX96453
CDX98596
CDX99411
CDY01565
CDY11123
CDY13298
CDY48045
CDY56697
CDY66321

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G16240.1 CDX68239 AT1G73190.1 23163742
AT3G16240.1 CDX72962 AT1G73190.1 23163742
AT3G16240.1 CDX96453 AT1G73190.1 23163742
AT3G16240.1 CDY11123 AT1G73190.1 23163742
AT3G16240.1 CDY48045 AT1G73190.1 23163742
AT3G16240.1 CDY66321 AT1G73190.1 23163742
AT3G16240.1 CDX75873 AT3G16240.1 23163742
AT3G16240.1 CDX82410 AT3G16240.1 23163742
AT3G16240.1 CDX78177 AT3G53420.1 23163742
AT3G16240.1 CDY13298 AT3G53420.1 23163742
AT3G16240.1 CDY56697 AT3G53420.1 23163742
AT3G16240.1 CDX78905 AT4G19030.1 21798944
AT3G16240.1 CDX98596 AT4G19030.1 21798944
AT3G16240.1 CDX99411 AT4G19030.1 21798944
AT3G16240.1 CDY01565 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX82410 Canola plasma membrane 90.18 99.6
Bra001626.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 89.09 98.39
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 87.27 96.39
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 86.91 95.98
AT3G16240.1 Thale cress plasma membrane 86.91 95.6
CDX97733 Canola endoplasmic reticulum, extracellular 85.45 94.76
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 85.45 94.76
Solyc12g044330.1.1 Tomato plastid 76.36 84.68
KRH09912 Soybean endoplasmic reticulum, plasma membrane, vacuole 74.55 83.0
KRG93712 Soybean plasma membrane, vacuole 70.55 81.86
KRH23420 Soybean plasma membrane, vacuole 73.45 81.78
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid, vacuole 71.64 81.07
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 74.55 81.03
GSMUA_Achr6P05830_001 Banana endoplasmic reticulum, extracellular, plasma membrane 72.0 80.82
GSMUA_Achr9P28940_001 Banana plasma membrane 71.27 80.0
PGSC0003DMT400006558 Potato endoplasmic reticulum, plasma membrane 70.91 78.31
Solyc06g066560.1.1 Tomato mitochondrion 76.73 77.29
Os06t0336200-01 Rice nucleus 69.45 77.02
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 69.45 76.4
VIT_09s0002g04020.t01 Wine grape plasma membrane, vacuole 69.09 76.31
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 69.09 76.0
EER89797 Sorghum plasma membrane 68.36 75.81
HORVU7Hr1G081770.8 Barley plasma membrane 68.0 75.1
TraesCS7B01G243000.1 Wheat plasma membrane 67.64 75.0
CDY51678 Canola plasma membrane, vacuole 68.0 74.8
TraesCS7A01G331300.1 Wheat unclear 66.91 74.19
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 67.64 74.1
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 67.27 73.71
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 55.64 72.86
TraesCS7D01G339600.1 Wheat plasma membrane 67.27 66.31
CDY48983 Canola plasma membrane 58.55 63.64
CDY28539 Canola plasma membrane 58.55 63.64
CDY66645 Canola plastid 50.91 63.35
CDY67380 Canola plastid 50.91 63.35
CDY13639 Canola plasma membrane 57.45 62.45
CDX83623 Canola golgi, plasma membrane, plastid 57.45 62.45
CDY53270 Canola plasma membrane 56.36 61.75
CDY69446 Canola cytosol 52.73 57.54
CDY07142 Canola cytosol 52.73 57.54
CDX77009 Canola cytosol, plasma membrane, vacuole 48.36 53.41
CDY35336 Canola extracellular 27.64 53.15
CDY66321 Canola plasma membrane 50.18 51.88
CDY11123 Canola cytosol 49.45 51.32
CDX68239 Canola cytosol 49.45 51.32
CDY48045 Canola golgi, mitochondrion, plasma membrane 49.45 51.13
CDX96453 Canola cytosol 49.09 50.94
CDX72962 Canola plasma membrane 48.73 50.57
CDY21731 Canola golgi, mitochondrion, plasma membrane 48.36 49.81
CDX81850 Canola golgi, mitochondrion, plasma membrane 48.0 49.44
CDY26214 Canola plasma membrane 46.91 48.31
CDY19176 Canola plasma membrane 46.91 48.31
CDY47413 Canola mitochondrion, plastid 38.91 41.47
CDX99048 Canola mitochondrion, plastid 38.18 40.7
CDY66912 Canola extracellular 26.91 35.92
CDY70391 Canola extracellular, golgi 20.36 35.22
CDX89115 Canola plasma membrane 28.36 34.67
CDX72515 Canola golgi, plasma membrane 32.0 34.65
CDX69112 Canola plasma membrane 34.18 33.45
CDX76314 Canola cytosol 34.18 33.45
CDY52648 Canola plasma membrane 34.18 33.45
CDY46759 Canola plasma membrane 34.55 33.33
CDY09192 Canola plasma membrane 31.27 33.2
CDX78177 Canola plasma membrane 34.55 33.1
CDY56697 Canola plasma membrane 34.55 33.1
CDY17511 Canola plasma membrane 33.82 33.1
CDX91341 Canola plasma membrane 34.18 32.98
CDY46758 Canola plasma membrane 33.82 32.86
CDY31523 Canola plasma membrane 30.91 32.69
CDX71032 Canola plasma membrane 30.91 32.69
CDY14415 Canola cytosol, peroxisome, plasma membrane 34.18 32.64
CDY07681 Canola plasma membrane 34.18 32.64
CDX91340 Canola plasma membrane 33.82 32.63
CDX67611 Canola plasma membrane 33.82 32.52
CDY07519 Canola plasma membrane 33.82 32.52
CDY13298 Canola plasma membrane 33.82 32.4
CDX88767 Canola plasma membrane 30.55 32.31
CDX78265 Canola plasma membrane 33.09 31.82
CDX73446 Canola peroxisome 33.09 31.82
CDY53629 Canola cytosol 29.82 31.66
CDY51161 Canola cytosol, peroxisome, plasma membrane 32.73 31.47
CDY48920 Canola plasma membrane 32.73 31.47
CDX71738 Canola plasma membrane 32.73 31.47
CDY07221 Canola cytosol, peroxisome, plasma membrane 32.73 31.47
CDX74334 Canola cytosol, peroxisome, plasma membrane 32.73 31.25
CDX91911 Canola cytosol, peroxisome, plasma membrane 32.73 31.25
CDX74777 Canola cytosol, peroxisome, plasma membrane 32.36 31.12
CDY18886 Canola cytosol, peroxisome, plasma membrane 32.36 31.12
CDY27346 Canola cytosol, peroxisome, plasma membrane 32.36 31.12
CDY37078 Canola cytosol, peroxisome, plasma membrane 32.36 31.12
CDX83385 Canola cytosol, peroxisome, plasma membrane 32.36 31.12
CDX74983 Canola cytosol, peroxisome, plasma membrane 22.18 30.96
CDX95670 Canola cytosol, peroxisome, plasma membrane 32.0 30.77
CDY10936 Canola plasma membrane 32.0 30.66
CDX94185 Canola plasma membrane 32.0 30.66
CDY38017 Canola plasma membrane 31.64 30.42
CDX90046 Canola cytosol, peroxisome, plasma membrane 31.64 30.42
CDX74984 Canola cytosol, peroxisome, plasma membrane 33.82 30.0
CDY15165 Canola plastid 32.0 27.16
CDY66913 Canola cytosol, mitochondrion, nucleus 1.82 10.87
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3GO:A0A078CLC3InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlants:CDX75873
ProteinID:CDX75873ProteinID:CDX75873.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00123859001InterPro:IPR023271
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF257SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0004EAB533SEG:seg
Description
BnaC03g39560D
Coordinates
chrLK031805:+:1396978..1398557
Molecular Weight (calculated)
27975.3 Da
IEP (calculated)
7.140
GRAVY (calculated)
0.893
Length
275 amino acids
Sequence
(BLAST)
001: MGMPKTIIFF IKQNKTFTLF HSSSKTMAGI AFGSFDDSFS LASLKAYLAE FISTLLFVFA GVGSAIAYGK LTSDAALDTS GLVAIAVCHG FALFVAVAIG
101: ANISGGHVNP AVTFGLALGG QITLITGLFY WIAQLLGSTA ACFLLKFVTG GLAVPTHSVA AGLGAIEGVV MEIIITFALV YTVYATAADP KKGSLGTIAP
201: LAIGLIVGAN ILAAGPFSGG SMNPARSFGP AVAAGDFSGH WVYWVGPLIG GGLAGLIYGN VFMSSSEHVP LASDF
Best Arabidopsis Sequence Match ( AT3G16240.1 )
(BLAST)
001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF
Arabidopsis Description
TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.