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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • vacuole 3
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68239
CDX72962
CDX75873
CDX78177
CDX82410
CDX83623
CDX96453
CDY11123
CDY13298
CDY13639
CDY28539
CDY48045
CDY48983
CDY56697
CDY66321

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G26520.1 CDX68239 AT1G73190.1 23163742
AT3G26520.1 CDX72962 AT1G73190.1 23163742
AT3G26520.1 CDX96453 AT1G73190.1 23163742
AT3G26520.1 CDY11123 AT1G73190.1 23163742
AT3G26520.1 CDY48045 AT1G73190.1 23163742
AT3G26520.1 CDY66321 AT1G73190.1 23163742
AT3G26520.1 CDX75873 AT3G16240.1 23163742
AT3G26520.1 CDX82410 AT3G16240.1 23163742
AT3G26520.1 CDX83623 AT3G26520.1 23163742
AT3G26520.1 CDY13639 AT3G26520.1 23163742
AT3G26520.1 CDY28539 AT3G26520.1 23163742
AT3G26520.1 CDY48983 AT3G26520.1 23163742
AT3G26520.1 CDX78177 AT3G53420.1 23163742
AT3G26520.1 CDY13298 AT3G53420.1 23163742
AT3G26520.1 CDY56697 AT3G53420.1 23163742
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra032937.1-P Field mustard plasma membrane 100.0 100.0
CDY48983 Canola plasma membrane 100.0 100.0
CDY13639 Canola plasma membrane 93.28 93.28
CDX83623 Canola golgi, plasma membrane, plastid 92.89 92.89
AT3G26520.1 Thale cress plasma membrane 91.3 91.3
CDY67380 Canola plastid 77.47 88.69
CDY66645 Canola plastid 77.47 88.69
CDY53270 Canola plasma membrane 84.98 85.66
Solyc10g083880.1.1 Tomato plastid 78.66 80.24
PGSC0003DMT400072432 Potato cytosol 78.66 80.24
Os03t0146100-01 Rice nucleus 78.66 79.6
KRH67767 Soybean mitochondrion 78.26 79.2
KRG96046 Soybean nucleus 77.87 78.8
GSMUA_Achr8P12920_001 Banana cytosol, plasma membrane, vacuole 77.87 78.8
VIT_08s0007g04780.t01 Wine grape cytosol 77.47 78.09
EER92857 Sorghum cytosol 77.08 78.0
Zm00001d027652_P001 Maize plasma membrane 75.49 76.4
GSMUA_Achr11P... Banana cytosol, extracellular, vacuole 74.7 75.6
GSMUA_Achr1P01270_001 Banana cytosol, plasma membrane, vacuole 74.7 75.6
TraesCS4A01G410800.1 Wheat golgi, plasma membrane, vacuole 74.7 75.6
TraesCS4B01G310900.1 Wheat unclear 74.7 75.6
HORVU4Hr1G079230.1 Barley vacuole 73.91 74.8
GSMUA_Achr5P19470_001 Banana endoplasmic reticulum, plasma membrane, vacuole 73.12 73.71
TraesCS4D01G308800.1 Wheat golgi, plasma membrane, vacuole 71.54 70.43
CDY07142 Canola cytosol 69.17 69.44
CDY69446 Canola cytosol 69.17 69.44
VIT_06s0061g00730.t01 Wine grape cytosol, plasma membrane, vacuole 67.98 68.53
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 64.43 65.2
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 64.03 64.8
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 53.75 64.76
CDX82410 Canola plasma membrane 63.24 64.26
CDY51678 Canola plasma membrane, vacuole 63.24 64.0
CDX97733 Canola endoplasmic reticulum, extracellular 62.45 63.71
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 62.45 63.45
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 62.45 63.45
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 62.45 62.95
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 62.45 62.95
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 61.66 62.9
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 61.26 61.26
CDX75873 Canola extracellular, golgi, vacuole 63.64 58.55
CDY48045 Canola golgi, mitochondrion, plasma membrane 60.08 57.14
CDY66321 Canola plasma membrane 59.68 56.77
CDX72962 Canola plasma membrane 59.29 56.6
CDX96453 Canola cytosol 58.89 56.23
CDY11123 Canola cytosol 58.5 55.85
CDX68239 Canola cytosol 58.5 55.85
CDX81850 Canola golgi, mitochondrion, plasma membrane 56.13 53.18
CDY21731 Canola golgi, mitochondrion, plasma membrane 56.13 53.18
CDX77009 Canola cytosol, plasma membrane, vacuole 51.38 52.21
CDY19176 Canola plasma membrane 54.94 52.06
CDY26214 Canola plasma membrane 54.94 52.06
CDY35336 Canola extracellular 28.46 50.35
CDY47413 Canola mitochondrion, plastid 39.13 38.37
CDX99048 Canola mitochondrion, plastid 38.74 37.98
CDY66912 Canola extracellular 28.06 34.47
CDX72515 Canola golgi, plasma membrane 34.39 34.25
CDY52648 Canola plasma membrane 37.15 33.45
CDX69112 Canola plasma membrane 37.15 33.45
CDX76314 Canola cytosol 36.76 33.1
CDX89115 Canola plasma membrane 29.25 32.89
CDY09192 Canola plasma membrane 33.6 32.82
CDY17511 Canola plasma membrane 36.36 32.74
CDY70391 Canola extracellular, golgi 20.55 32.7
CDY56697 Canola plasma membrane 36.76 32.4
CDX78177 Canola plasma membrane 36.76 32.4
CDY31523 Canola plasma membrane 33.2 32.31
CDX71032 Canola plasma membrane 33.2 32.31
CDY46759 Canola plasma membrane 36.36 32.28
CDX88767 Canola plasma membrane 32.81 31.92
CDY46758 Canola plasma membrane 35.57 31.8
CDY13298 Canola plasma membrane 35.97 31.71
CDX91341 Canola plasma membrane 35.57 31.58
CDX91340 Canola plasma membrane 35.57 31.58
CDY53629 Canola cytosol 32.02 31.27
CDX67611 Canola plasma membrane 35.18 31.12
CDY07519 Canola plasma membrane 35.18 31.12
CDX74983 Canola cytosol, peroxisome, plasma membrane 24.11 30.96
CDY07681 Canola plasma membrane 35.18 30.9
CDY14415 Canola cytosol, peroxisome, plasma membrane 35.18 30.9
CDX73446 Canola peroxisome 34.78 30.77
CDX78265 Canola plasma membrane 34.78 30.77
CDX90046 Canola cytosol, peroxisome, plasma membrane 34.39 30.42
CDY07221 Canola cytosol, peroxisome, plasma membrane 33.99 30.07
CDX91911 Canola cytosol, peroxisome, plasma membrane 33.99 29.86
CDY51161 Canola cytosol, peroxisome, plasma membrane 33.6 29.72
CDX74334 Canola cytosol, peroxisome, plasma membrane 33.6 29.51
CDX71738 Canola plasma membrane 33.2 29.37
CDY48920 Canola plasma membrane 33.2 29.37
CDY10936 Canola plasma membrane 33.2 29.27
CDX74984 Canola cytosol, peroxisome, plasma membrane 35.57 29.03
CDY38017 Canola plasma membrane 32.81 29.02
CDY37078 Canola cytosol, peroxisome, plasma membrane 32.41 28.67
CDX83385 Canola cytosol, peroxisome, plasma membrane 32.41 28.67
CDX74777 Canola cytosol, peroxisome, plasma membrane 32.41 28.67
CDY18886 Canola cytosol, peroxisome, plasma membrane 32.41 28.67
CDY27346 Canola cytosol, peroxisome, plasma membrane 32.41 28.67
CDX94185 Canola plasma membrane 32.41 28.57
CDX95670 Canola cytosol, peroxisome, plasma membrane 32.02 28.32
CDY15165 Canola plastid 33.6 26.23
CDY66913 Canola cytosol, mitochondrion, nucleus 1.19 6.52
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3GO:A0A078GTR3UniProt:A0A078GTR3InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY28539ProteinID:CDY28539ProteinID:CDY28539.1ProteinID:CDY48983.1GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00040464001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230
PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF265SUPFAM:SSF81338TMHMM:TMhelix
UniParc:UPI00019D340A:::::
Description
BnaC02g36210DBnaA02g28130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTR3]
Coordinates
chrLK032221:+:496120..497879
Molecular Weight (calculated)
25794.3 Da
IEP (calculated)
5.432
GRAVY (calculated)
0.834
Length
253 amino acids
Sequence
(BLAST)
001: MPTRNIAIGG VQEEVTHPSA LRAALAEFIS TLIFVFAGSG SGIAFNKLTD NGATTPSGLV AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGAFLGGNIT
101: LLRGLLYWIA QLLGSVVACF LLQFATGGLA VPAFGLSAGV GTLNGLVFEI VMTFGLVYTV YATAIDPKNG SLGTIAPIAI GFIVGANILA GGAFSGASMN
201: PAVAFGPAVV SWSWSNHWIY WVGPLVGGGL AGIIYDFVYI IENGHEQLPT TDY
Best Arabidopsis Sequence Match ( AT3G26520.1 )
(BLAST)
001: MPTRNIAIGG VQEEVYHPNA LRAALAEFIS TLIFVFAGSG SGIAFNKITD NGATTPSGLV AAALAHAFGL FVAVSVGANI SGGHVNPAVT FGVLLGGNIT
101: LLRGILYWIA QLLGSVAACF LLSFATGGEP IPAFGLSAGV GSLNALVFEI VMTFGLVYTV YATAVDPKNG SLGTIAPIAI GFIVGANILA GGAFSGASMN
201: PAVAFGPAVV SWTWTNHWVY WAGPLIGGGL AGIIYDFVFI DENAHEQLPT TDY
Arabidopsis Description
TIP1-2Aquaporin TIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q41963]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.