Factsheet for VIT_06s0061g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 4
cytosol 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g00730.t01
VIT_08s0007g04780.t01
VIT_09s0002g04020.t01
VIT_16s0039g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36830.1	VIT_16s0039g00220.t01	AT1G73190.1	21798944
AT3G26520.1	VIT_16s0039g00220.t01	AT1G73190.1	23163742
AT3G26520.1	VIT_09s0002g04020.t01	AT3G16240.1	23163742
AT3G26520.1	VIT_06s0061g00730.t01	AT3G26520.1	23163742
AT3G26520.1	VIT_08s0007g04780.t01	AT3G26520.1	23163742

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g04780.t01	Wine grape	cytosol	80.88	80.88
Solyc10g083880.1.1	Tomato	plastid	75.7	76.61
VIT_13s0019g00330.t01	Wine grape	cytosol, plasma membrane, vacuole	76.49	76.49
PGSC0003DMT400072432	Potato	cytosol	75.3	76.21
CDY67380	Canola	plastid	65.34	74.21
CDY66645	Canola	plastid	65.34	74.21
AT2G36830.1	Thale cress	golgi, plasma membrane, vacuole	73.71	73.71
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	73.31	73.6
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	73.31	73.6
Bra017222.1-P	Field mustard	cytosol	72.91	72.91
Os03t0146100-01	Rice	nucleus	72.51	72.8
CDY53270	Canola	plasma membrane	72.51	72.51
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	72.11	72.4
KRG96046	Soybean	nucleus	72.11	72.4
Zm00001d027652_P001	Maize	plasma membrane	72.11	72.4
KRH67767	Soybean	mitochondrion	71.71	72.0
CDY13639	Canola	plasma membrane	72.11	71.54
CDX83623	Canola	golgi, plasma membrane, plastid	72.11	71.54
Bra025210.1-P	Field mustard	plasma membrane	71.71	71.15
EER92857	Sorghum	cytosol	70.52	70.8
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	70.52	70.52
TraesCS4A01G410800.1	Wheat	golgi, plasma membrane, vacuole	69.72	70.0
TraesCS4B01G310900.1	Wheat	unclear	69.32	69.6
VIT_06s0004g04120.t01	Wine grape	cytosol, plasma membrane, vacuole	74.1	69.4
HORVU4Hr1G079230.1	Barley	vacuole	68.92	69.2
AT3G26520.1	Thale cress	plasma membrane	69.72	69.17
CDY48983	Canola	plasma membrane	68.53	67.98
Bra032937.1-P	Field mustard	plasma membrane	68.53	67.98
CDY28539	Canola	plasma membrane	68.53	67.98
TraesCS4D01G308800.1	Wheat	golgi, plasma membrane, vacuole	67.73	66.15
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	59.76	60.24
VIT_00s0229g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	56.57	56.8
VIT_00s2783g00010.t01	Wine grape	extracellular	27.89	56.45
VIT_16s0039g00220.t01	Wine grape	cytosol	57.77	55.98
VIT_16s0022g00330.t01	Wine grape	cytosol, extracellular, plasma membrane, plastid	48.21	48.59
VIT_04s0008g03550.t01	Wine grape	plasma membrane	51.0	42.52
VIT_15s0021g02420.t01	Wine grape	extracellular	41.83	41.83
VIT_18s0001g06480.t01	Wine grape	cytosol, extracellular, vacuole	17.93	31.91
VIT_08s0040g01890.t01	Wine grape	plasma membrane	33.86	29.62
VIT_12s0034g00250.t01	Wine grape	cytosol, extracellular, plastid	13.94	29.41
VIT_06s0004g02850.t01	Wine grape	plasma membrane	32.67	29.29
VIT_13s0019g04280.t01	Wine grape	plasma membrane	32.67	28.87
VIT_03s0038g02520.t01	Wine grape	plasma membrane	31.08	27.96
VIT_02s0025g03390.t01	Wine grape	peroxisome	31.47	27.53
VIT_15s0046g02410.t01	Wine grape	plasma membrane	31.08	27.27
VIT_13s0067g00220.t01	Wine grape	plasma membrane	30.68	26.92
VIT_15s0046g02420.t01	Wine grape	peroxisome	29.88	26.22

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100263698	wikigene:100263698	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
ProteinID:CCB44218	ProteinID:CCB44218.1	UniProt:F6GW83	EMBL:FN594957	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0009705	GO:GO:0015250
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0042807	GO:GO:0055085
InterPro:IPR023271	EntrezGene:LOC100263698	wikigene:LOC100263698	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF265	SUPFAM:SSF81338	TIGR:TC53295
TIGR:TC55300	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00015C9CE1	ArrayExpress:VIT_06s0061g00730	EnsemblPlantsGene:VIT_06s0061g00730
EnsemblPlants:VIT_06s0061g00730.t01	unigene:Vvi.9158	RefSeq:XP_002274538	RefSeq:XP_002274538.1	RefSeq:XP_003632259	RefSeq:XP_003632259.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:18257635..18258750

Molecular Weight (calculated)

26095.8 Da

IEP (calculated)

5.426

GRAVY (calculated)

0.715

Length

251 amino acids

Sequence
(BLAST)

001: MPFLRIAIGQ PQETYQPDAL KAALAEFFGT LIFVFAGEGS GMAFSKLTDD GSTTPAGLIA EALGHGLGLF VAVSGACNIS GGHINPAVTF GAFVGGNITL
101: LRGILYWIAQ LLGSAVACLL LKFCTHGMTT SAFAISSGVT VWNAFVLEIV MTFGLVYTVY ATAIDPRKGN VGIIAPLAIG LIVAANILAG GAFDGASMNP
201: AMSFGPALVS WDWTNHWVYW AGPLIGGGIA GLVYETVFIH HTHEPLPGSE F

Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)

001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y

Arabidopsis Description

TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.