Factsheet for VIT_06s0004g02850.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g04280.t01	Wine grape	plasma membrane	86.07	84.86
TraesCS2B01G225900.1	Wheat	golgi	86.43	83.45
TraesCS2D01G206300.1	Wheat	golgi	86.43	83.45
VIT_03s0038g02520.t01	Wine grape	plasma membrane	82.86	83.15
TraesCS2A01G198500.1	Wheat	plasma membrane	86.07	83.1
Os07t0448800-01	Rice	plasma membrane	85.71	82.76
EER98451	Sorghum	plasma membrane	85.36	82.41
Zm00001d019563_P006	Maize	plasma membrane	85.0	82.07
Zm00001d005421_P001	Maize	plasma membrane	84.29	80.82
VIT_08s0040g01890.t01	Wine grape	plasma membrane	81.79	79.79
HORVU2Hr1G038740.1	Barley	golgi, mitochondrion, plasma membrane	85.71	70.38
VIT_13s0067g00220.t01	Wine grape	plasma membrane	70.0	68.53
VIT_15s0046g02420.t01	Wine grape	peroxisome	70.0	68.53
VIT_02s0025g03390.t01	Wine grape	peroxisome	68.93	67.25
VIT_15s0046g02410.t01	Wine grape	plasma membrane	66.07	64.69
VIT_18s0001g06480.t01	Wine grape	cytosol, extracellular, vacuole	25.36	50.35
VIT_12s0034g00250.t01	Wine grape	cytosol, extracellular, plastid	20.0	47.06
VIT_00s0229g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	32.86	36.8
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	31.79	35.74
VIT_00s2783g00010.t01	Wine grape	extracellular	15.71	35.48
VIT_13s0019g00330.t01	Wine grape	cytosol, plasma membrane, vacuole	31.79	35.46
VIT_06s0004g04120.t01	Wine grape	cytosol, plasma membrane, vacuole	33.21	34.7
VIT_08s0007g04780.t01	Wine grape	cytosol	30.36	33.86
VIT_16s0039g00220.t01	Wine grape	cytosol	30.36	32.82
VIT_06s0061g00730.t01	Wine grape	cytosol, plasma membrane, vacuole	29.29	32.67
VIT_16s0022g00330.t01	Wine grape	cytosol, extracellular, plasma membrane, plastid	28.93	32.53
VIT_15s0021g02420.t01	Wine grape	extracellular	25.0	27.89
VIT_04s0008g03550.t01	Wine grape	plasma membrane	29.29	27.24

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100233093	wikigene:100233093	MapMan:24.3.1.2	ProteinID:ABC84558	ProteinID:ABC84558.1
InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	ProteinID:CCB43670	ProteinID:CCB43670.1	EMBL:DQ358107	EMBL:FN594951
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS
RefSeq:NP_001268056.1	PFAM:PF00230	EntrezGene:PIP2	wikigene:PIP2	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF260	UniProt:Q2HZF5	SUPFAM:SSF81338	TIGR:TC53235	TIGR:TC57468
TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0000692330	ArrayExpress:VIT_06s0004g02850	EnsemblPlantsGene:VIT_06s0004g02850	EnsemblPlants:VIT_06s0004g02850.t01
unigene:Vvi.25941	unigene:Vvi.5743	:	:	:	:

Description

Aquaporin PIP2 [Source:UniProtKB/TrEMBL;Acc:Q2HZF5]

Coordinates

chr6:+:3578735..3580302

Molecular Weight (calculated)

30015.5 Da

IEP (calculated)

7.536

GRAVY (calculated)

0.450

Length

280 amino acids

Sequence
(BLAST)

001: MTKDVETSGQ EFSNKDYHDP PPAPLIDPDE LTQWSLYRAI IAEFIATLLF LYITVLTVIG YKSQSDTDPC GGVGILGIAW AFGGMIFILV YCTAGISGGH
101: INPAVTFGLF LARKVSLVRA LMYMIAQCLG AVCGVGLVKA FQSSLYNRYG GGANELAGGY NKGVGLGAEI IGTFVLVYTV FSATDPKRNA RDSHVPVLAP
201: LPIGFAVFMV HLATIPITGT GINPARSFGA AVIYNNDKAW DDHWMFWVGP FIGAAIAAFY HQYILRAAAI KALGSFRSNA

Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)

001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV

Arabidopsis Description

PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.