Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P10640_001 | Banana | cytosol, golgi, plasma membrane | 75.68 | 77.17 |
| GSMUA_Achr4P26010_001 | Banana | cytosol, golgi, plasma membrane | 72.97 | 74.41 |
| Solyc06g072130.2.1 | Tomato | extracellular | 72.97 | 72.97 |
| AT1G17810.1 | Thale cress | cytosol, golgi, plasma membrane | 74.9 | 72.66 |
| KRH38823 | Soybean | nucleus | 71.43 | 72.55 |
| PGSC0003DMT400069330 | Potato | cytosol | 72.2 | 72.2 |
| KRH09321 | Soybean | cytosol, mitochondrion, plasma membrane | 70.27 | 71.37 |
| PGSC0003DMT400039507 | Potato | cytosol, golgi, plasma membrane | 71.43 | 71.15 |
| Solyc03g019820.2.1 | Tomato | cytosol, golgi, plasma membrane | 71.04 | 70.77 |
| CDX68239 | Canola | cytosol | 72.2 | 70.57 |
| CDY11123 | Canola | cytosol | 72.2 | 70.57 |
| CDY66321 | Canola | plasma membrane | 72.2 | 70.3 |
| Bra016014.1-P | Field mustard | cytosol | 71.81 | 70.19 |
| CDX72962 | Canola | plasma membrane | 71.81 | 70.19 |
| CDY48045 | Canola | golgi, mitochondrion, plasma membrane | 71.81 | 69.92 |
| Bra008079.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 71.81 | 69.92 |
| CDX96453 | Canola | cytosol | 71.43 | 69.81 |
| Bra031005.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 71.43 | 69.29 |
| CDY21731 | Canola | golgi, mitochondrion, plasma membrane | 71.43 | 69.29 |
| AT1G73190.1 | Thale cress | plasma membrane | 71.43 | 69.03 |
| CDX81850 | Canola | golgi, mitochondrion, plasma membrane | 71.04 | 68.91 |
| Bra025947.1-P | Field mustard | cytosol, golgi, plasma membrane | 70.66 | 68.54 |
| KRG92517 | Soybean | cytosol | 67.18 | 68.5 |
| KRH34280 | Soybean | endoplasmic reticulum | 67.18 | 68.5 |
| CDY19176 | Canola | plasma membrane | 70.27 | 68.16 |
| CDY26214 | Canola | plasma membrane | 70.27 | 68.16 |
| Zm00001d013956_P003 | Maize | plasma membrane | 66.8 | 66.03 |
| EER94020 | Sorghum | golgi, mitochondrion, plasma membrane | 67.57 | 65.79 |
| Zm00001d032610_P003 | Maize | mitochondrion, plastid | 66.41 | 64.66 |
| Os10t0492600-01 | Rice | plastid | 65.64 | 64.39 |
| TraesCS1A01G165400.1 | Wheat | golgi, mitochondrion, plasma membrane, plastid | 64.86 | 63.88 |
| TraesCS1D01G175200.1 | Wheat | unclear | 64.86 | 63.88 |
| HORVU1Hr1G043890.2 | Barley | mitochondrion | 64.86 | 63.88 |
| TraesCS1B01G182200.1 | Wheat | golgi | 64.09 | 63.12 |
| VIT_08s0007g04780.t01 | Wine grape | cytosol | 59.46 | 61.35 |
| VIT_13s0019g00330.t01 | Wine grape | cytosol, plasma membrane, vacuole | 58.69 | 60.56 |
| Os04t0527900-01 | Rice | plastid | 60.23 | 58.87 |
| TraesCS2A01G374400.1 | Wheat | plasma membrane | 59.46 | 58.11 |
| VIT_06s0061g00730.t01 | Wine grape | cytosol, plasma membrane, vacuole | 55.98 | 57.77 |
| TraesCS2D01G370800.1 | Wheat | plasma membrane | 59.07 | 57.74 |
| Zm00001d002952_P001 | Maize | plasma membrane | 57.92 | 56.6 |
| TraesCS2B01G391400.1 | Wheat | extracellular, plasma membrane, vacuole | 57.92 | 56.6 |
| VIT_00s2783g00010.t01 | Wine grape | extracellular | 26.64 | 55.65 |
| EES11105 | Sorghum | mitochondrion, plasma membrane | 57.14 | 55.22 |
| VIT_06s0004g04120.t01 | Wine grape | cytosol, plasma membrane, vacuole | 57.14 | 55.22 |
| VIT_00s0229g00130.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 51.74 | 53.6 |
| VIT_09s0002g04020.t01 | Wine grape | plasma membrane, vacuole | 50.97 | 53.01 |
| EER95659 | Sorghum | mitochondrion | 50.58 | 48.34 |
| VIT_16s0022g00330.t01 | Wine grape | cytosol, extracellular, plasma membrane, plastid | 46.33 | 48.19 |
| VIT_15s0021g02420.t01 | Wine grape | extracellular | 40.15 | 41.43 |
| VIT_04s0008g03550.t01 | Wine grape | plasma membrane | 44.4 | 38.21 |
| Zm00001d048520_P014 | Maize | mitochondrion | 37.45 | 36.19 |
| VIT_18s0001g06480.t01 | Wine grape | cytosol, extracellular, vacuole | 17.37 | 31.91 |
| VIT_03s0038g02520.t01 | Wine grape | plasma membrane | 33.98 | 31.54 |
| VIT_12s0034g00250.t01 | Wine grape | cytosol, extracellular, plastid | 14.29 | 31.09 |
| VIT_06s0004g02850.t01 | Wine grape | plasma membrane | 32.82 | 30.36 |
| VIT_13s0067g00220.t01 | Wine grape | plasma membrane | 32.82 | 29.72 |
| VIT_15s0046g02420.t01 | Wine grape | peroxisome | 32.43 | 29.37 |
| VIT_02s0025g03390.t01 | Wine grape | peroxisome | 32.43 | 29.27 |
| VIT_15s0046g02410.t01 | Wine grape | plasma membrane | 32.05 | 29.02 |
| VIT_08s0040g01890.t01 | Wine grape | plasma membrane | 32.05 | 28.92 |
| VIT_13s0019g04280.t01 | Wine grape | plasma membrane | 31.66 | 28.87 |
Protein Annotations
| Gene3D:1.20.1080.10 | EntrezGene:100252897 | wikigene:100252897 | MapMan:24.3.1.3 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr |
| ProteinID:CBI26397 | ProteinID:CBI26397.3 | UniProt:D7T7C6 | EMBL:FN595750 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 |
| GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 | GO:GO:0008150 | GO:GO:0009705 | GO:GO:0015250 |
| GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0042807 | GO:GO:0055085 |
| InterPro:IPR023271 | EntrezGene:LOC100252897 | wikigene:LOC100252897 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 |
| PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF30 | SUPFAM:SSF81338 | TIGR:TC64551 |
| TIGR:TC69819 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI00015C88D8 | ArrayExpress:VIT_16s0039g00220 | EnsemblPlantsGene:VIT_16s0039g00220 |
| EnsemblPlants:VIT_16s0039g00220.t01 | unigene:Vvi.3267 | RefSeq:XP_002262978 | RefSeq:XP_002262978.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr16:-:102284..103573
Molecular Weight (calculated)
27418.6 Da
IEP (calculated)
7.961
GRAVY (calculated)
0.660
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPRRYAFGR AEEATHPDSM RATLSELVAT FIFVFAGEGS VLALGKLYAG ATALTVPALV MVALAHGLAL FAAVSASINV SGGHVNPAVT FGALVGGRIS
101: LLRALYYWVA QLLGAVLAAL LLRFATGGLR PVGFTVASGY DEWHAMLLEI AMTFGLVYTV YATAIDPKRG SLGVIAPLAI GFIVGANILV GGAFDGASMN
201: PARAFGPALV GWRWRYQWVY WVGPLVGGAL AALIYEFLVI PTEPQHIHTH HQPLAPEDY
101: LLRALYYWVA QLLGAVLAAL LLRFATGGLR PVGFTVASGY DEWHAMLLEI AMTFGLVYTV YATAIDPKRG SLGVIAPLAI GFIVGANILV GGAFDGASMN
201: PARAFGPALV GWRWRYQWVY WVGPLVGGAL AALIYEFLVI PTEPQHIHTH HQPLAPEDY
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAG EGSILALDKL YWDTAAHTGT NTPGGLVLVA LAHALALFAA VSAAINVSGG HVNPAVTFAA
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
Arabidopsis Description
TIP3-2BETA-TIP [Source:UniProtKB/TrEMBL;Acc:A0A178WI57]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.