Factsheet for HORVU4Hr1G079230.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
vacuole 4
golgi 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	golgi
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

vacuole: 16581873
vacuole: 19142958
vacuole: 19391183

msms PMID: 19142958 doi

A Endler, S Reiland, B Gerrits, UG Schmidt, S Baginsky, E Martinoia

Institute of Plant Biology, University of Zurich, Zurich, Switzerland. aendler@botinst.uzh.ch

msms PMID: 16581873 doi

A Endler, S Meyer, S Schelbert, T Schneider, W Weschke, SW Peters, F Keller, S Baginsky, E Martinoia, UG Schmidt

University of Zurich, Institute of Plant Biology, CH-8008 Zurich, Switzerland.

msms PMID: 19391183 doi

T Schneider, M Schellenberg, S Meyer, F Keller, P Gehrig, K Riedel, Y Lee, L Eberl, E Martinoia

Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, Zurich, Switzerland. Thomas.Schneider@botinst.uzh.ch

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G043890.2
HORVU2Hr1G038740.1
HORVU4Hr1G079230.1
HORVU7Hr1G081770.8

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36830.1	HORVU1Hr1G043890.2	AT1G73190.1	21798944
AT3G26520.1	HORVU1Hr1G043890.2	AT1G73190.1	23163742
AT3G26520.1	HORVU7Hr1G081770.8	AT3G16240.1	23163742
AT3G26520.1	HORVU4Hr1G079230.1	AT3G26520.1	23163742
AT3G26520.1	HORVU2Hr1G038740.1	AT3G53420.1	23163742

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G310900.1	Wheat	unclear	99.2	99.2
TraesCS4A01G410800.1	Wheat	golgi, plasma membrane, vacuole	98.8	98.8
TraesCS4D01G308800.1	Wheat	golgi, plasma membrane, vacuole	96.0	93.39
EER92857	Sorghum	cytosol	91.6	91.6
Zm00001d027652_P001	Maize	plasma membrane	90.4	90.4
Os03t0146100-01	Rice	nucleus	89.6	89.6
GSMUA_Achr8P12920_001	Banana	cytosol, plasma membrane, vacuole	83.2	83.2
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	81.2	81.2
Solyc06g074820.2.1	Tomato	plastid	80.0	80.0
PGSC0003DMT400018375	Potato	cytosol	79.6	79.6
GSMUA_Achr1P01270_001	Banana	cytosol, plasma membrane, vacuole	79.6	79.6
GSMUA_Achr5P19470_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	79.6	79.28
CDY66645	Canola	plastid	69.2	78.28
CDY67380	Canola	plastid	69.2	78.28
Bra017222.1-P	Field mustard	cytosol	77.2	76.89
CDY53270	Canola	plasma membrane	76.4	76.1
VIT_08s0007g04780.t01	Wine grape	cytosol	75.6	75.3
AT3G26520.1	Thale cress	plasma membrane	75.6	74.7
AT2G36830.1	Thale cress	golgi, plasma membrane, vacuole	74.8	74.5
KRH67767	Soybean	mitochondrion	74.4	74.4
Bra032937.1-P	Field mustard	plasma membrane	74.8	73.91
CDX83623	Canola	golgi, plasma membrane, plastid	74.8	73.91
CDY13639	Canola	plasma membrane	74.8	73.91
CDY28539	Canola	plasma membrane	74.8	73.91
CDY48983	Canola	plasma membrane	74.8	73.91
KRG96046	Soybean	nucleus	73.6	73.6
Bra025210.1-P	Field mustard	plasma membrane	74.4	73.52
HORVU3Hr1G116790.2	Barley	vacuole	71.2	70.63
VIT_06s0061g00730.t01	Wine grape	cytosol, plasma membrane, vacuole	69.2	68.92
HORVU7Hr1G081770.8	Barley	plasma membrane	63.2	63.45
HORVU0Hr1G032130.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	61.2	61.45
HORVU6Hr1G062980.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	61.2	61.45
HORVU1Hr1G043890.2	Barley	mitochondrion	54.8	52.09
HORVU4Hr1G085250.2	Barley	plastid	46.4	38.54
HORVU3Hr1G031620.5	Barley	nucleus, peroxisome, plastid	47.6	37.42
HORVU0Hr1G014490.7	Barley	plastid	37.2	31.31
HORVU5Hr1G125600.1	Barley	golgi, peroxisome, plasma membrane	34.8	29.9
HORVU2Hr1G089940.3	Barley	plasma membrane	33.2	28.62
HORVU2Hr1G089970.3	Barley	endoplasmic reticulum, extracellular	9.6	28.24
HORVU6Hr1G058930.20	Barley	golgi, plasma membrane	32.0	27.68
HORVU6Hr1G014300.1	Barley	cytosol, golgi, peroxisome	32.0	27.4
HORVU6Hr1G064140.1	Barley	golgi, peroxisome, plasma membrane	31.6	27.24
HORVU5Hr1G084230.1	Barley	extracellular, golgi, mitochondrion	33.6	27.01
HORVU0Hr1G011280.5	Barley	cytosol	28.0	26.72
HORVU2Hr1G038740.1	Barley	golgi, mitochondrion, plasma membrane	36.4	26.69
HORVU3Hr1G031680.1	Barley	vacuole	28.4	26.49
HORVU5Hr1G029550.2	Barley	plasma membrane	33.2	26.1
HORVU2Hr1G097780.15	Barley	golgi, mitochondrion, plastid	28.0	26.02
HORVU5Hr1G027240.4	Barley	plasma membrane	32.8	25.79
HORVU5Hr1G055200.4	Barley	golgi, plastid	32.0	25.72
HORVU2Hr1G010990.2	Barley	plasma membrane	30.8	24.21
HORVU7Hr1G038940.1	Barley	golgi	16.4	20.1
HORVU2Hr1G089820.6	Barley	golgi	21.6	18.88

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	EMBL:AB540221	EMBL:AK359670	EMBL:AK367756	InterPro:Aquaporin-like
InterPro:Aquaporin_transptr	UniProt:D2KZ38	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:HORVU4Hr1G079230
EnsemblPlants:HORVU4Hr1G079230.1	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF265	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI00000ACC93
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:D2KZ38]

Coordinates

chrchr4H:+:611617220..611619244

Molecular Weight (calculated)

25771.4 Da

IEP (calculated)

6.508

GRAVY (calculated)

0.817

Length

250 amino acids

Sequence
(BLAST)

001: MPVSRIAVGS HREVYEVGAL KAALAEFIST LIFVFAGQGS GMAFSKLSPD GVATPAGLIS AAIAHAFALF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: FRGLLYWVAQ LLGSTAACFL LRFSTGGLPT GTFGLTGIGA WEAVVLEIVM TFGLVYTVYA TAVDPKKGSL GTIAPIAIGF IVGANILVGG AFSGASMNPA
201: VSFGPALVSW EWGYQWVYWV GPLIGGGLAG VIYELLFISR THEQLPTTDY

Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)

001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y

Arabidopsis Description

TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.