Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 5
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G032130.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| TraesCS6A01G250300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 98.39 | 98.39 |
| TraesCS6D01G232100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 98.39 | 98.39 |
| TraesCS6B01G275100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 97.59 | 97.59 |
| Os02t0658100-01 | Rice | vacuole | 75.5 | 91.26 |
| KXG31086 | Sorghum | golgi, plasma membrane, vacuole | 89.96 | 89.96 |
| Zm00001d051362_P001 | Maize | plasma membrane | 89.96 | 89.96 |
| Zm00001d017485_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 87.55 | 87.2 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane | 85.54 | 85.54 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane | 83.13 | 83.13 |
| PGSC0003DMT400030994 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 83.13 | 82.8 |
| Solyc06g060760.2.1 | Tomato | endoplasmic reticulum | 82.33 | 82.0 |
| VIT_00s0229g00130.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 81.53 | 81.2 |
| VIT_00s2783g00010.t01 | Wine grape | extracellular | 40.16 | 80.65 |
| Bra026245.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 77.11 | 76.8 |
| CDY65121 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 77.11 | 76.8 |
| AT4G17340.1 | Thale cress | golgi, plasma membrane, vacuole | 76.71 | 76.4 |
| AT5G47450.1 | Thale cress | golgi, plasma membrane | 76.71 | 76.4 |
| CDY64499 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 76.71 | 76.4 |
| Bra022131.1-P | Field mustard | extracellular | 61.85 | 75.49 |
| CDY51678 | Canola | plasma membrane, vacuole | 75.5 | 75.2 |
| KRH28112 | Soybean | mitochondrion | 74.3 | 74.3 |
| CDY28932 | Canola | endoplasmic reticulum, extracellular, vacuole | 62.65 | 74.29 |
| KRH77347 | Soybean | mitochondrion | 73.9 | 73.9 |
| CDY59296 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 74.3 | 73.71 |
| CDX77768 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 74.3 | 73.71 |
| Bra024943.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 73.9 | 73.31 |
| HORVU7Hr1G081770.8 | Barley | plasma membrane | 69.88 | 69.88 |
| HORVU4Hr1G079230.1 | Barley | vacuole | 61.45 | 61.2 |
| HORVU3Hr1G116790.2 | Barley | vacuole | 57.83 | 57.14 |
| AT1G52180.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 28.11 | 56.45 |
| HORVU1Hr1G043890.2 | Barley | mitochondrion | 49.0 | 46.39 |
| HORVU4Hr1G085250.2 | Barley | plastid | 45.38 | 37.54 |
| HORVU3Hr1G031620.5 | Barley | nucleus, peroxisome, plastid | 46.59 | 36.48 |
| HORVU2Hr1G097780.15 | Barley | golgi, mitochondrion, plastid | 35.74 | 33.09 |
| HORVU0Hr1G014490.7 | Barley | plastid | 38.55 | 32.32 |
| HORVU2Hr1G089940.3 | Barley | plasma membrane | 36.95 | 31.72 |
| HORVU2Hr1G089970.3 | Barley | endoplasmic reticulum, extracellular | 10.44 | 30.59 |
| HORVU5Hr1G125600.1 | Barley | golgi, peroxisome, plasma membrane | 35.74 | 30.58 |
| HORVU6Hr1G014300.1 | Barley | cytosol, golgi, peroxisome | 34.14 | 29.11 |
| HORVU6Hr1G058930.20 | Barley | golgi, plasma membrane | 33.73 | 29.07 |
| HORVU2Hr1G038740.1 | Barley | golgi, mitochondrion, plasma membrane | 39.76 | 29.03 |
| HORVU6Hr1G064140.1 | Barley | golgi, peroxisome, plasma membrane | 33.73 | 28.97 |
| HORVU5Hr1G029550.2 | Barley | plasma membrane | 35.74 | 27.99 |
| HORVU5Hr1G084230.1 | Barley | extracellular, golgi, mitochondrion | 34.94 | 27.97 |
| HORVU5Hr1G027240.4 | Barley | plasma membrane | 35.34 | 27.67 |
| HORVU2Hr1G010990.2 | Barley | plasma membrane | 35.34 | 27.67 |
| HORVU5Hr1G055200.4 | Barley | golgi, plastid | 34.14 | 27.33 |
| HORVU3Hr1G031680.1 | Barley | vacuole | 28.51 | 26.49 |
| HORVU0Hr1G011280.5 | Barley | cytosol | 27.71 | 26.34 |
| HORVU7Hr1G038940.1 | Barley | golgi | 17.67 | 21.57 |
| HORVU2Hr1G089820.6 | Barley | golgi | 24.1 | 20.98 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | EMBL:AB540222 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | UniProt:D2KZ39 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | EnsemblPlantsGene:HORVU6Hr1G062980 | EnsemblPlants:HORVU6Hr1G062980.1 | InterPro:IPR023271 |
| InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF257 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI00017BDB5B | : |
Description
Tonoplast intrinsic protein [Source:UniProtKB/TrEMBL;Acc:D2KZ39]
Coordinates
chrchr6H:+:423193038..423194233
Molecular Weight (calculated)
25206.6 Da
IEP (calculated)
5.962
GRAVY (calculated)
0.900
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKLAFGSCG DSFSATSIRA YVAEFIATLL FVFAGVGSAI AYGKLTEDGA LDPAGLVAIA IAHAFALFVG VAIAANISGG HLNPAVTFGL AVGGHITILT
101: GIFYWVAQLL GSAAACFLLK FVTHGKAIPT HAVAAGMNEF EGVVMEIVIT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGN FAGNWVYWVG PLIGGGLAGF VYGDVFIASY QPVADQDYA
101: GIFYWVAQLL GSAAACFLLK FVTHGKAIPT HAVAAGMNEF EGVVMEIVIT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGN FAGNWVYWVG PLIGGGLAGF VYGDVFIASY QPVADQDYA
001: MVKIEVGSVG DSFSVSSLKA YLSEFIATLL FVFAGVGSAV AFAKLTSDGA LDPAGLVAIA IAHAFALFVG VSIAANISGG HLNPAVTLGL AIGGNITLIT
101: GFFYWIAQCL GSIVACLLLV FVTNGKSVPT HGVSAGLGAV EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD LSQIWIYWVG PLVGGALAGL IYGDVFIGSY EAVETREIRV
101: GFFYWIAQCL GSIVACLLLV FVTNGKSVPT HGVSAGLGAV EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD LSQIWIYWVG PLVGGALAGL IYGDVFIGSY EAVETREIRV
Arabidopsis Description
TIP2-3Aquaporin TIP2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGL2]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.