Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- plasma membrane 1
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G076400.1 | Wheat | golgi, peroxisome, plasma membrane | 95.21 | 94.24 |
| TraesCS6B01G114400.1 | Wheat | golgi, peroxisome, plasma membrane | 94.52 | 93.56 |
| TraesCS6A01G082900.1 | Wheat | golgi, peroxisome, plasma membrane | 94.18 | 93.22 |
| HORVU5Hr1G125600.1 | Barley | golgi, peroxisome, plasma membrane | 76.37 | 76.63 |
| OQU91911 | Sorghum | plasma membrane | 65.75 | 68.09 |
| HORVU0Hr1G014490.7 | Barley | plastid | 68.49 | 67.34 |
| Zm00001d014285_P001 | Maize | plasma membrane | 65.07 | 67.14 |
| Os03t0861300-01 | Rice | cytosol, peroxisome, plasma membrane | 63.7 | 66.43 |
| HORVU2Hr1G089970.3 | Barley | endoplasmic reticulum, extracellular | 19.18 | 65.88 |
| HORVU2Hr1G089940.3 | Barley | plasma membrane | 65.07 | 65.52 |
| HORVU6Hr1G058930.20 | Barley | golgi, plasma membrane | 57.19 | 57.79 |
| HORVU6Hr1G064140.1 | Barley | golgi, peroxisome, plasma membrane | 56.51 | 56.9 |
| HORVU2Hr1G038740.1 | Barley | golgi, mitochondrion, plasma membrane | 65.75 | 56.3 |
| HORVU5Hr1G084230.1 | Barley | extracellular, golgi, mitochondrion | 59.59 | 55.95 |
| HORVU0Hr1G011280.5 | Barley | cytosol | 49.32 | 54.96 |
| HORVU5Hr1G027240.4 | Barley | plasma membrane | 58.22 | 53.46 |
| HORVU5Hr1G029550.2 | Barley | plasma membrane | 57.88 | 53.14 |
| HORVU5Hr1G055200.4 | Barley | golgi, plastid | 56.51 | 53.05 |
| HORVU2Hr1G010990.2 | Barley | plasma membrane | 55.82 | 51.26 |
| HORVU7Hr1G038940.1 | Barley | golgi | 31.51 | 45.1 |
| HORVU2Hr1G089820.6 | Barley | golgi | 41.44 | 42.31 |
| HORVU6Hr1G062980.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 29.11 | 34.14 |
| HORVU0Hr1G032130.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 29.11 | 34.14 |
| HORVU3Hr1G116790.2 | Barley | vacuole | 28.42 | 32.94 |
| HORVU7Hr1G081770.8 | Barley | plasma membrane | 28.08 | 32.93 |
| HORVU4Hr1G079230.1 | Barley | vacuole | 27.4 | 32.0 |
| HORVU1Hr1G043890.2 | Barley | mitochondrion | 28.42 | 31.56 |
| HORVU3Hr1G031620.5 | Barley | nucleus, peroxisome, plastid | 27.4 | 25.16 |
| HORVU4Hr1G085250.2 | Barley | plastid | 24.66 | 23.92 |
| HORVU2Hr1G097780.15 | Barley | golgi, mitochondrion, plastid | 18.49 | 20.07 |
| HORVU3Hr1G031680.1 | Barley | vacuole | 16.1 | 17.54 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | EMBL:AK361542 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | UniProt:F2DCC5 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | EnsemblPlantsGene:HORVU6Hr1G014300 | EnsemblPlants:HORVU6Hr1G014300.1 | InterPro:IPR023271 |
| InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF163 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0002005D75 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DCC5]
Coordinates
chrchr6H:+:30371902..30373435
Molecular Weight (calculated)
30698.1 Da
IEP (calculated)
9.103
GRAVY (calculated)
0.334
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAQQGKHS RDAHGSNDTK DYLDPPAVRL FDAGELGQWS LYRAIIAEFT ASLLFVYVSI ATVIGHKRQT DADACSGAGV LGIAWAFGGM IAVLVYCTAG
101: ISGGHVNPAV TFGLLLARKL SLPRALLYTS AQCLGAICGA AMVRTVHGAQ HYELYGGGAN EVAPGYSKAG GLLAEAAGTF LLVYTVFSAT DPKRMARDTH
201: VPVLAPLLIG FAVVVAHLAT IPVTGTGINP ARSLGAAVVY NNSKAWREQW IFWVGPFSGA AVAMAYHQYV LRGGAAAKPH FNFDNGFRRL GC
101: ISGGHVNPAV TFGLLLARKL SLPRALLYTS AQCLGAICGA AMVRTVHGAQ HYELYGGGAN EVAPGYSKAG GLLAEAAGTF LLVYTVFSAT DPKRMARDTH
201: VPVLAPLLIG FAVVVAHLAT IPVTGTGINP ARSLGAAVVY NNSKAWREQW IFWVGPFSGA AVAMAYHQYV LRGGAAAKPH FNFDNGFRRL GC
001: MAKDVEGPEG FQTRDYEDPP PTPFFDADEL TKWSLYRAVI AEFVATLLFL YITVLTVIGY KIQSDTKAGG VDCGGVGILG IAWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSYYD RYGGGANSLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNKS KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSYYD RYGGGANSLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNKS KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV
Arabidopsis Description
PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.