Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G076400.1 | Wheat | golgi, peroxisome, plasma membrane | 97.29 | 97.29 |
| TraesCS6B01G114400.1 | Wheat | golgi, peroxisome, plasma membrane | 97.29 | 97.29 |
| HORVU6Hr1G014300.1 | Barley | cytosol, golgi, peroxisome | 93.22 | 94.18 |
| TraesCS5A01G530600.1 | Wheat | golgi, peroxisome, plasma membrane | 78.98 | 79.79 |
| TraesCS4A01G312700.1 | Wheat | plasma membrane | 75.93 | 76.98 |
| OQU91911 | Sorghum | plasma membrane | 65.42 | 68.44 |
| TraesCS2A01G198500.1 | Wheat | plasma membrane | 66.1 | 67.24 |
| Os03t0861300-01 | Rice | cytosol, peroxisome, plasma membrane | 63.73 | 67.14 |
| Zm00001d014285_P001 | Maize | plasma membrane | 64.41 | 67.14 |
| TraesCS2A01G379900.1 | Wheat | plasma membrane | 65.42 | 66.55 |
| TraesCS2A01G379800.1 | Wheat | plasma membrane | 64.75 | 65.86 |
| TraesCS5A01G100000.1 | Wheat | plasma membrane | 63.73 | 65.73 |
| TraesCS6A01G222100.1 | Wheat | golgi, peroxisome, plasma membrane | 62.71 | 64.69 |
| TraesCS2A01G065700.1 | Wheat | golgi | 61.36 | 63.73 |
| TraesCS5A01G332300.1 | Wheat | plasma membrane | 59.66 | 60.48 |
| TraesCS5A01G181000.1 | Wheat | plastid | 56.61 | 57.59 |
| TraesCS6A01G245100.1 | Wheat | golgi, peroxisome, plasma membrane | 56.61 | 57.59 |
| TraesCS6A01G405700.1 | Wheat | golgi | 56.95 | 57.53 |
| TraesCS6A01G405600.1 | Wheat | plasma membrane | 56.61 | 57.19 |
| TraesCS4A01G286200.1 | Wheat | golgi, peroxisome, plasma membrane | 53.9 | 52.3 |
| TraesCS7A01G191200.1 | Wheat | golgi, peroxisome, plasma membrane | 52.88 | 51.32 |
| TraesCS2A01G407700.2 | Wheat | golgi, peroxisome, plasma membrane | 43.73 | 44.64 |
| TraesCS6A01G250300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 29.49 | 34.94 |
| TraesCS2A01G414100.1 | Wheat | plasma membrane | 29.15 | 34.68 |
| TraesCS7A01G331300.1 | Wheat | unclear | 28.14 | 33.47 |
| TraesCS3A01G535300.1 | Wheat | plasma membrane | 28.47 | 33.33 |
| TraesCS2A01G374400.1 | Wheat | plasma membrane | 29.15 | 32.45 |
| TraesCS4A01G410800.1 | Wheat | golgi, plasma membrane, vacuole | 27.46 | 32.4 |
| TraesCS1A01G165400.1 | Wheat | golgi, mitochondrion, plasma membrane, plastid | 27.8 | 31.18 |
| TraesCS2A01G414200.1 | Wheat | plastid | 26.78 | 30.15 |
| TraesCS3A01G434600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 24.07 | 29.96 |
| TraesCS3A01G155800.1 | Wheat | plasma membrane | 24.07 | 28.63 |
| TraesCS5A01G518300.1 | Wheat | golgi, plasma membrane, vacuole | 24.75 | 28.52 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF163 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6A01G082900 |
| EnsemblPlants:TraesCS6A01G082900.1 | TIGR:cd00333 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:51760690..51761577
Molecular Weight (calculated)
30947.4 Da
IEP (calculated)
9.084
GRAVY (calculated)
0.397
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAAQGKQS REAHGNNDIG VAKDYLDPPA VRLFDASELG QWSLYRAIIA EFMASLLFVY VSVATVIGHK RQTDAEACSG AGVLGIAWAF GGMIAVLVYC
101: TAGISGGHVN PAVTFGLLLA RKLSLPRAFL YTSAQCLGAI CGAAMVRAVH GARYYELYGG GANEVAPGYS KAGGLLAEAA GTFVLVYTVF SATDPKRMAR
201: DTHVPVLAPL LIGFAVVVAH LATIPVTGTG INPARSLGAA VVYNNSKAWS EQWIFWVGPF SGAAVAMAYH QYILRGGAAA KPHFNFDNGF RRLGC
101: TAGISGGHVN PAVTFGLLLA RKLSLPRAFL YTSAQCLGAI CGAAMVRAVH GARYYELYGG GANEVAPGYS KAGGLLAEAA GTFVLVYTVF SATDPKRMAR
201: DTHVPVLAPL LIGFAVVVAH LATIPVTGTG INPARSLGAA VVYNNSKAWS EQWIFWVGPF SGAAVAMAYH QYILRGGAAA KPHFNFDNGF RRLGC
001: MAKDVEGPEG FQTRDYEDPP PTPFFDADEL TKWSLYRAVI AEFVATLLFL YITVLTVIGY KIQSDTKAGG VDCGGVGILG IAWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSYYD RYGGGANSLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNKS KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSYYD RYGGGANSLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNKS KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV
Arabidopsis Description
PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.