Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G368500.1 | Wheat | cytosol | 97.99 | 97.99 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 97.99 | 97.99 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 97.59 | 97.59 |
| Os04t0534400-01 | Rice | cytosol | 82.73 | 82.4 |
| EES12559 | Sorghum | cytosol | 79.92 | 79.92 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 60.64 | 66.23 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 63.45 | 66.11 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 78.31 | 65.44 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 61.85 | 64.44 |
| Solyc01g090910.2.1 | Tomato | nucleus | 59.04 | 63.09 |
| Solyc10g018350.1.1 | Tomato | cytosol | 58.63 | 61.34 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 57.83 | 60.25 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 57.43 | 59.83 |
| Bra003313.1-P | Field mustard | cytosol | 53.41 | 59.64 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 57.03 | 59.41 |
| CDY57247 | Canola | cytosol | 57.03 | 59.17 |
| CDY56247 | Canola | cytosol | 57.03 | 59.17 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 56.63 | 59.0 |
| AT2G45140.1 | Thale cress | cytosol | 56.22 | 58.58 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 55.82 | 58.16 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 56.22 | 58.09 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 55.82 | 57.68 |
| CDY41153 | Canola | cytosol | 55.02 | 57.56 |
| CDX71796 | Canola | cytosol | 55.02 | 57.56 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 55.42 | 57.5 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 55.42 | 57.5 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 55.02 | 57.32 |
| CDY48365 | Canola | cytosol | 55.02 | 57.32 |
| KRH76164 | Soybean | endoplasmic reticulum | 55.42 | 57.26 |
| KRH65384 | Soybean | cytosol | 55.42 | 57.26 |
| Bra007547.1-P | Field mustard | cytosol | 54.22 | 56.72 |
| AT3G60600.1 | Thale cress | cytosol | 55.82 | 54.3 |
| GSMUA_Achr11P... | Banana | cytosol | 43.37 | 54.0 |
| HORVU0Hr1G021390.2 | Barley | cytosol, golgi, plasma membrane | 50.6 | 52.94 |
| AT2G23830.1 | Thale cress | cytosol | 31.33 | 52.35 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 58.23 | 51.79 |
| PGSC0003DMT400066920 | Potato | cytosol | 55.42 | 51.69 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 46.99 | 51.54 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 59.44 | 50.17 |
| Solyc06g034220.2.1 | Tomato | nucleus | 45.38 | 49.78 |
| HORVU6Hr1G063580.1 | Barley | cytosol | 40.96 | 43.59 |
| Bra035442.1-P | Field mustard | cytosol | 18.88 | 43.52 |
| PGSC0003DMT400076826 | Potato | cytosol | 9.64 | 40.0 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 15.66 | 38.24 |
| HORVU2Hr1G097220.19 | Barley | plastid | 34.14 | 34.41 |
| HORVU6Hr1G062050.9 | Barley | mitochondrion | 34.14 | 29.21 |
| HORVU3Hr1G099730.5 | Barley | cytosol | 40.96 | 27.13 |
| HORVU2Hr1G003640.7 | Barley | cytosol | 20.48 | 24.29 |
| AT1G51270.3 | Thale cress | cytosol | 47.39 | 18.52 |
| HORVU3Hr1G006600.1 | Barley | cytosol | 24.5 | 8.58 |
| HORVU5Hr1G012420.3 | Barley | nucleus | 22.89 | 5.78 |
| HORVU6Hr1G011350.2 | Barley | cytosol | 0.8 | 0.16 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:HORVU2Hr1G091830 | EnsemblPlants:HORVU2Hr1G091830.4 |
| InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M0VWJ7 | InterPro:MSP_dom | PFAM:PF00635 |
| PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF49 | InterPro:PapD-like_sf | SUPFAM:SSF49354 |
| TMHMM:TMhelix | UniParc:UPI000295936D | InterPro:VAP | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr2H:+:649645179..649649065
Molecular Weight (calculated)
27739.3 Da
IEP (calculated)
6.735
GRAVY (calculated)
-0.474
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSDSKELLG IEPLELRFPF EFMKQISCSM ELTNRTDDYL AFKVKTTSPK KYCVRPNSGI VPPRSTSSVV VTMQALKQAP PDMQCKDKFL VQSAVVTEGT
101: AVKDITGEMF KKESGNVVDE VRLKVVYVQP PRPPSPVREG SEEGSSPRPS WSDGTNINYQ DMQATRESDE PPLSSARKEP LEITSETSPL ISRLTEERNS
201: AIQQNNKLRE ELDLVRREIS KQNGNGGFPL VFVVAVALLG ILLGYLMKR
101: AVKDITGEMF KKESGNVVDE VRLKVVYVQP PRPPSPVREG SEEGSSPRPS WSDGTNINYQ DMQATRESDE PPLSSARKEP LEITSETSPL ISRLTEERNS
201: AIQQNNKLRE ELDLVRREIS KQNGNGGFPL VFVVAVALLG ILLGYLMKR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.