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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44556 Canola cytosol, extracellular, plastid 25.0 14.71
PGSC0003DMT400032484 Potato cytosol, nucleus, plasma membrane 51.67 14.62
Solyc10g018350.1.1 Tomato cytosol 55.0 13.87
Bra003313.1-P Field mustard cytosol 48.33 13.0
GSMUA_Achr11P... Banana cytosol 43.33 13.0
Bra035442.1-P Field mustard cytosol 23.33 12.96
KRH65384 Soybean cytosol 51.67 12.86
KRH76164 Soybean endoplasmic reticulum 51.67 12.86
CDX83400 Canola cytosol, nucleus, plasma membrane 50.0 12.45
CDX95631 Canola cytosol, golgi, plasma membrane 50.0 12.45
CDY27392 Canola cytosol, golgi, plasma membrane 48.33 12.13
CDY37029 Canola cytosol, golgi, plasma membrane 48.33 12.13
VIT_15s0048g00220.t01 Wine grape cytosol, nucleus, plasma membrane 48.33 12.13
Bra040323.1-P Field mustard cytosol, golgi, plasma membrane 48.33 12.13
CDY56247 Canola cytosol 48.33 12.08
CDY57247 Canola cytosol 48.33 12.08
PGSC0003DMT400066920 Potato cytosol 53.33 11.98
CDY41153 Canola cytosol 46.67 11.76
Bra007547.1-P Field mustard cytosol 46.67 11.76
CDX71796 Canola cytosol 46.67 11.76
GSMUA_Achr5P20880_001 Banana cytosol 46.67 11.72
Bra014481.1-P Field mustard cytosol, golgi, plasma membrane 46.67 11.72
GSMUA_Achr11P... Banana cytosol, nucleus, plasma membrane 46.67 11.72
CDX89063 Canola cytosol, golgi, plasma membrane 46.67 11.72
CDY48365 Canola cytosol 46.67 11.72
GSMUA_Achr1P20280_001 Banana cytosol 41.67 11.68
CDX67837 Canola cytosol, golgi, plasma membrane 46.67 11.67
Bra003423.1-P Field mustard cytosol, golgi, plasma membrane 46.67 11.67
PGSC0003DMT400066797 Potato cytosol 45.0 11.25
EES12559 Sorghum cytosol 46.67 11.24
Os08t0156700-01 Rice plasma membrane 45.0 11.11
TraesCS7A01G300700.1 Wheat cytosol 43.33 10.7
TraesCS7D01G296400.1 Wheat cytosol 43.33 10.7
PGSC0003DMT400055602 Potato cytosol, golgi, plasma membrane 40.0 10.57
TraesCS6B01G266100.1 Wheat cytosol, golgi, plasma membrane 40.0 10.53
TraesCS6A01G237600.1 Wheat cytosol, golgi, plasma membrane 40.0 10.53
TraesCS6D01G220300.1 Wheat cytosol 40.0 10.53
HORVU6Hr1G060760.3 Barley cytosol, golgi, plasma membrane 40.0 10.53
Os02t0643000-01 Rice plasma membrane 45.0 10.42
Os04t0534400-01 Rice cytosol 43.33 10.4
Zm00001d049553_P001 Maize plasma membrane 41.67 10.25
EES14570 Sorghum cytosol, nucleus, plasma membrane 41.67 10.25
PGSC0003DMT400052797 Potato cytosol 36.67 10.23
Zm00001d017390_P001 Maize cytosol 38.33 10.22
KXG31128 Sorghum cytosol 38.33 10.22
TraesCS2A01G368500.1 Wheat cytosol 41.67 10.04
PGSC0003DMT400067515 Potato nucleus 36.67 10.0
Zm00001d051288_P001 Maize cytosol 36.67 9.78
HORVU2Hr1G091830.4 Barley cytosol 40.0 9.64
TraesCS2D01G365300.2 Wheat cytosol 40.0 9.64
TraesCS2B01G385700.2 Wheat cytosol 40.0 9.64
GSMUA_Achr8P11120_001 Banana cytosol 43.33 9.29
Zm00001d025939_P003 Maize cytosol, golgi, plasma membrane 45.0 9.06
HORVU7Hr1G071270.2 Barley mitochondrion 43.33 8.81
PGSC0003DMT400057834 Potato cytosol 45.0 8.54
Zm00001d036342_P001 Maize cytosol 35.0 8.4
PGSC0003DMT400027619 Potato cytosol 38.33 6.48
AT1G51270.3 Thale cress cytosol 53.33 5.02
Protein Annotations
Gene3D:2.60.40.10MapMan:35.2GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0016020InterPro:IPR000535InterPro:IPR013783InterPro:Ig-like_fold
UniProt:M1CXG3InterPro:MSP_domPFAM:PF00635EnsemblPlantsGene:PGSC0003DMG402029877PGSC:PGSC0003DMG402029877EnsemblPlants:PGSC0003DMT400076826
PFscan:PS50202PANTHER:PTHR10809PANTHER:PTHR10809:SF94InterPro:PapD-like_sfSUPFAM:SSF49354UniParc:UPI0002952870
InterPro:VAP:::::
Description
VAP27 [Source:PGSC_GENE;Acc:PGSC0003DMG402029877]
Coordinates
chr6:+:19917616..19918274
Molecular Weight (calculated)
7126.6 Da
IEP (calculated)
9.811
GRAVY (calculated)
-0.780
Length
60 amino acids
Sequence
(BLAST)
1: MLECNNDIRK NKSNNYVTFK EKTINPKKYY VKPNTGIFMP QSSNDVIIAM QWHKEAPLYM
Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.