Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G45140.1 | Thale cress | cytosol | 22.14 | 59.0 |
| Solyc01g090910.2.1 | Tomato | nucleus | 20.09 | 54.94 |
| AT2G23830.1 | Thale cress | cytosol | 12.56 | 53.69 |
| PGSC0003DMT400076826 | Potato | cytosol | 5.02 | 53.33 |
| AT3G60600.1 | Thale cress | cytosol | 21.04 | 52.34 |
| Solyc10g018350.1.1 | Tomato | cytosol | 19.47 | 52.1 |
| AT4G00170.1 | Thale cress | cytosol, golgi, peroxisome, plastid | 18.21 | 48.54 |
| Zm00001d049553_P001 | Maize | plasma membrane | 18.52 | 48.36 |
| Os08t0156700-01 | Rice | plasma membrane | 18.21 | 47.74 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 17.9 | 47.7 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 18.21 | 47.54 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 18.52 | 47.39 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 18.52 | 47.39 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 18.37 | 46.99 |
| TraesCS7D01G296400.1 | Wheat | cytosol | 17.9 | 46.91 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 17.9 | 46.91 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 18.21 | 46.59 |
| Os04t0534400-01 | Rice | cytosol | 18.21 | 46.4 |
| PGSC0003DMT400066920 | Potato | cytosol | 19.15 | 45.69 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 17.11 | 45.61 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 15.23 | 45.33 |
| EES12559 | Sorghum | cytosol | 17.58 | 44.98 |
| Solyc06g034220.2.1 | Tomato | nucleus | 15.7 | 44.05 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 15.7 | 44.05 |
| Zm00001d017390_P001 | Maize | cytosol | 15.54 | 44.0 |
| Zm00001d051288_P001 | Maize | cytosol | 15.23 | 43.11 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 18.68 | 42.5 |
| KXG31128 | Sorghum | cytosol | 14.91 | 42.22 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 14.91 | 41.67 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 14.91 | 41.67 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 14.91 | 41.67 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 14.76 | 41.23 |
| Os02t0643000-01 | Rice | plasma membrane | 15.86 | 39.0 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 17.9 | 38.64 |
| GSMUA_Achr11P... | Banana | cytosol | 11.62 | 37.0 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 16.8 | 35.91 |
| Zm00001d036342_P001 | Maize | cytosol | 13.66 | 34.8 |
| AT5G47180.1 | Thale cress | cytosol | 11.93 | 34.55 |
| AT1G08820.3 | Thale cress | cytosol | 16.48 | 27.2 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | MapMan:26.8.2.1 | Gene3D:3.40.50.10140 | EntrezGene:841550 | ProteinID:AEE32645.1 |
| ProteinID:AEE32646.2 | ProteinID:ANM58849.1 | ProteinID:ANM58851.1 | ProteinID:ANM58852.1 | ProteinID:ANM58856.1 | ProteinID:ANM58859.1 |
| ArrayExpress:AT1G51270 | EnsemblPlantsGene:AT1G51270 | RefSeq:AT1G51270 | TAIR:AT1G51270 | RefSeq:AT1G51270-TAIR-G | EnsemblPlants:AT1G51270.3 |
| TAIR:AT1G51270.3 | Unigene:At.50948 | UniProt:F4I818 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | InterPro:IPR000157 |
| InterPro:IPR000535 | InterPro:IPR013783 | InterPro:IPR035897 | InterPro:Ig-like_fold | InterPro:MSP_dom | RefSeq:NP_001154418.1 |
| RefSeq:NP_001319193.1 | RefSeq:NP_001321256.1 | RefSeq:NP_001321257.1 | RefSeq:NP_001321258.1 | RefSeq:NP_001321262.1 | RefSeq:NP_001321265.1 |
| PFAM:PF00635 | PFAM:PF01582 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50104 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf |
| SMART:SM00255 | SUPFAM:SSF49354 | SUPFAM:SSF52200 | InterPro:TIR_dom | InterPro:Toll_tir_struct_dom_sf | UniParc:UPI0001A7B323 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
Vesicle-associated protein 1-4 [Source:UniProtKB/TrEMBL;Acc:F4I818]
Coordinates
chr1:+:19007364..19011272
Molecular Weight (calculated)
71933.3 Da
IEP (calculated)
5.610
GRAVY (calculated)
-0.183
Length
637 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTDELLTFD HVDIRFPIEL NKQGSCSLNL TNKTDNYVAF KAQTTKPKMY CVKPSVGVVL PRSSCEVLVV MQALKEAPAD RQCKDKLLFQ CKVVEPGTMD
101: KEVTSEMFSK EAGHRVEETI FKIIYVAPPQ PQSPVQEGLE DGSSPSASVS DKGNASEVFV GPSVGIVDLI RMSDELLIID PVDVQFPIEL NKKVSCSLNL
201: TNKTENYVAF KAKTTNAKKY YVRPNVGVVL PRSSCEVLVI MQALKEAPAD MQCRDKLLFQ CKVVEPETTA KDVTSEMFSK EAGHPAEETR LKVMYVTPPQ
301: PPSPVQEGTE EGSSPRASVS DNGNASEAFV DMLRSLLVPL FSNAASSTDD HGITLPQYQV FINFRGDELR NSFVGFLVKA MRLEKINVFT DEVELRGTNL
401: NYLFRRIEES RVAVAIFSER YTESCWCLDE LVKMKEQMEQ GKLVVVPVFY RLNATACKRF MGAFGDNLRN LEWEYRSEPE RIQKWKEALS SVFSNIGLTS
501: DIRSNESKFV DSIVEEVKKV LIKIADNFFK DHLPWKFPRL TLTDGTTIYI KRSYFVGFLV QETANVSLDD HDLRDSPLVT NYVCFTTPIN DLLKFHTLLI
601: SLSHKVSSKV HHSSLFFATM YLFEFESFTF IVWLSPT
101: KEVTSEMFSK EAGHRVEETI FKIIYVAPPQ PQSPVQEGLE DGSSPSASVS DKGNASEVFV GPSVGIVDLI RMSDELLIID PVDVQFPIEL NKKVSCSLNL
201: TNKTENYVAF KAKTTNAKKY YVRPNVGVVL PRSSCEVLVI MQALKEAPAD MQCRDKLLFQ CKVVEPETTA KDVTSEMFSK EAGHPAEETR LKVMYVTPPQ
301: PPSPVQEGTE EGSSPRASVS DNGNASEAFV DMLRSLLVPL FSNAASSTDD HGITLPQYQV FINFRGDELR NSFVGFLVKA MRLEKINVFT DEVELRGTNL
401: NYLFRRIEES RVAVAIFSER YTESCWCLDE LVKMKEQMEQ GKLVVVPVFY RLNATACKRF MGAFGDNLRN LEWEYRSEPE RIQKWKEALS SVFSNIGLTS
501: DIRSNESKFV DSIVEEVKKV LIKIADNFFK DHLPWKFPRL TLTDGTTIYI KRSYFVGFLV QETANVSLDD HDLRDSPLVT NYVCFTTPIN DLLKFHTLLI
601: SLSHKVSSKV HHSSLFFATM YLFEFESFTF IVWLSPT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.