Factsheet for AT2G45140.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37029	Canola	cytosol, golgi, plasma membrane	89.96	89.96
CDX95631	Canola	cytosol, golgi, plasma membrane	90.38	89.63
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	89.54	89.54
CDY27392	Canola	cytosol, golgi, plasma membrane	89.54	89.54
CDX83400	Canola	cytosol, nucleus, plasma membrane	89.54	88.8
Bra003313.1-P	Field mustard	cytosol	82.43	88.34
CDY56247	Canola	cytosol	87.03	86.67
CDY57247	Canola	cytosol	86.61	86.25
AT3G60600.1	Thale cress	cytosol	82.85	77.34
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	73.22	73.22
KRH65384	Soybean	cytosol	73.22	72.61
KRH76164	Soybean	endoplasmic reticulum	73.22	72.61
AT2G23830.1	Thale cress	cytosol	40.59	65.1
Zm00001d049553_P001	Maize	plasma membrane	62.76	61.48
GSMUA_Achr5P20880_001	Banana	cytosol	60.25	60.25
Os08t0156700-01	Rice	plasma membrane	60.67	59.67
TraesCS7A01G300700.1	Wheat	cytosol	60.25	59.26
TraesCS7D01G296400.1	Wheat	cytosol	60.25	59.26
Os04t0534400-01	Rice	cytosol	61.92	59.2
EES14570	Sorghum	cytosol, nucleus, plasma membrane	60.25	59.02
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	58.16	58.16
EES12559	Sorghum	cytosol	59.83	57.43
AT4G00170.1	Thale cress	cytosol, golgi, peroxisome, plastid	56.9	56.9
HORVU2Hr1G091830.4	Barley	cytosol	58.58	56.22
TraesCS2A01G368500.1	Wheat	cytosol	58.16	55.82
Zm00001d017390_P001	Maize	cytosol	52.3	55.56
TraesCS2B01G385700.2	Wheat	cytosol	57.74	55.42
TraesCS2D01G365300.2	Wheat	cytosol	57.32	55.02
GSMUA_Achr1P20280_001	Banana	cytosol	48.95	54.67
Zm00001d051288_P001	Maize	cytosol	51.05	54.22
KXG31128	Sorghum	cytosol	51.05	54.22
TraesCS6D01G220300.1	Wheat	cytosol	51.46	53.95
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	51.05	53.51
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	50.63	53.07
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	50.63	53.07
GSMUA_Achr8P11120_001	Banana	cytosol	59.41	50.71
HORVU7Hr1G071270.2	Barley	mitochondrion	60.67	49.15
GSMUA_Achr11P...	Banana	cytosol	41.0	49.0
Os02t0643000-01	Rice	plasma membrane	51.05	47.1
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	57.74	46.31
AT5G47180.1	Thale cress	cytosol	38.91	42.27
Zm00001d036342_P001	Maize	cytosol	39.75	38.0
AT1G08820.3	Thale cress	cytosol	42.26	26.17
AT1G51270.3	Thale cress	cytosol	59.0	22.14

Protein Annotations

Gene3D:2.60.40.10	MapMan:20.7.1	EntrezGene:819122	UniProt:A0A178W0Q8	ProteinID:AEC10514.1	ArrayExpress:AT2G45140
EnsemblPlantsGene:AT2G45140	RefSeq:AT2G45140	TAIR:AT2G45140	RefSeq:AT2G45140-TAIR-G	EnsemblPlants:AT2G45140.1	TAIR:AT2G45140.1
EMBL:AY088399	EMBL:AY093014	Unigene:At.27608	EMBL:BT006283	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005829	GO:GO:0005886	GO:GO:0006605
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:MSP_dom	RefSeq:NP_182039.1	ProteinID:OAP11115.1	PFAM:PF00635	PIRSF:PIRSF019693
PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0005052
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF94	Symbol:PVA12	InterPro:PapD-like_sf	UniProt:Q9SHC8	SUPFAM:SSF49354	TMHMM:TMhelix
UniParc:UPI00000A0803	InterPro:VAP	SEG:seg	:	:	:

Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]

Coordinates

chr2:+:18610806..18613302

Molecular Weight (calculated)

26443.6 Da

IEP (calculated)

9.138

GRAVY (calculated)

-0.467

Length

239 amino acids

Sequence
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.