Factsheet for VIT_15s0048g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0245g00010.t01
VIT_00s0245g00030.t01
VIT_00s0267g00030.t01
VIT_01s0011g03390.t01
VIT_01s0011g06000.t01
VIT_01s0011g06010.t01
VIT_02s0025g04130.t01
VIT_02s0025g05160.t01
VIT_03s0038g02520.t01
VIT_03s0038g03900.t01
VIT_05s0020g00750.t01
VIT_05s0049g00200.t01
VIT_06s0004g01050.t01
VIT_06s0080g00970.t01
VIT_07s0005g00140.t01
VIT_08s0007g01510.t01
VIT_10s0003g01840.t01
VIT_10s0003g04580.t01
VIT_11s0052g00220.t01
VIT_11s0052g00230.t01
VIT_11s0052g00240.t01
VIT_11s0052g00260.t01
VIT_11s0052g00280.t01
VIT_12s0055g00700.t01
VIT_12s0055g00850.t01
VIT_12s0055g00860.t01
VIT_12s0055g00870.t01
VIT_12s0059g02160.t01
VIT_12s0059g02180.t01
VIT_12s0059g02220.t01
VIT_12s0059g02230.t01
VIT_12s0059g02290.t01
VIT_15s0048g00220.t01
VIT_16s0100g00640.t01
VIT_17s0000g00110.t01
VIT_18s0001g11760.t01
VIT_18s0001g14760.t01
VIT_18s0001g14770.t01
VIT_18s0001g14780.t01
VIT_18s0001g14790.t01
VIT_18s0001g14800.t01
VIT_18s0001g14810.t01
VIT_19s0015g00340.t01
VIT_19s0015g01110.t01
VIT_19s0015g01790.t01
VIT_19s0085g00270.t01
VIT_19s0090g00200.t01
VIT_19s0135g00070.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60600.1	VIT_05s0049g00200.t01	AT1G04340.1	21798944
AT3G60600.1	VIT_02s0025g05160.t01	AT1G12390.1	21798944
AT3G60600.1	VIT_19s0135g00070.t01	AT1G17080.1	21798944
AT3G60600.1	VIT_18s0001g11760.t01	AT1G47530.1	21798944
AT3G60600.1	VIT_05s0020g00750.t01	AT1G48240.1	21798944
AT3G60600.1	VIT_02s0025g05160.t01	AT1G62880.1	21798944
AT3G60600.1	VIT_02s0025g04130.t01	AT1G63120.1	21798944
AT3G60600.1	VIT_18s0001g14760.t01	AT1G75880.1	21798944
AT3G60600.1	VIT_18s0001g14770.t01	AT1G75880.1	21798944
AT3G60600.1	VIT_18s0001g14780.t01	AT1G75880.1	21798944
AT3G60600.1	VIT_18s0001g14790.t01	AT1G75880.1	21798944
AT3G60600.1	VIT_18s0001g14800.t01	AT1G75880.1	21798944
AT3G60600.1	VIT_18s0001g14810.t01	AT1G75880.1	21798944
AT3G60600.1	VIT_19s0085g00270.t01	AT1G77350.1	21798944
AT3G60600.1	VIT_01s0011g06000.t01	AT2G01770.1	21798944
AT3G60600.1	VIT_01s0011g06010.t01	AT2G01770.1	21798944
AT3G60600.1	VIT_12s0055g00700.t01	AT2G31490.1	21798944
AT3G60600.1	VIT_12s0059g02290.t01	AT2G32380.1	21798944
AT3G60600.1	VIT_10s0003g01840.t01	AT2G34380.1	21798944
AT3G60600.1	VIT_10s0003g04580.t01	AT2G34690.1	18845362
AT3G60600.1	VIT_11s0052g00220.t01	AT2G34690.1	18845362
AT3G60600.1	VIT_11s0052g00230.t01	AT2G34690.1	18845362
AT3G60600.1	VIT_11s0052g00240.t01	AT2G34690.1	18845362
AT3G60600.1	VIT_11s0052g00260.t01	AT2G34690.1	18845362
AT3G60600.1	VIT_11s0052g00280.t01	AT2G34690.1	18845362
AT3G60600.1	VIT_07s0005g00140.t01	AT2G47770.1	21798944
AT3G60600.1	VIT_19s0015g00340.t01	AT3G13175.1	21798944
AT3G60600.1	VIT_19s0090g00200.t01	AT3G20510.1	21798944
AT3G60600.1	VIT_12s0059g02160.t01	AT3G21690.1	21798944
AT3G60600.1	VIT_12s0059g02180.t01	AT3G21690.1	21798944
AT3G60600.1	VIT_12s0059g02220.t01	AT3G21690.1	21798944
AT3G60600.1	VIT_12s0059g02230.t01	AT3G21690.1	21798944
AT3G60600.1	VIT_12s0055g00850.t01	AT3G25190.1	21798944
AT3G60600.1	VIT_12s0055g00860.t01	AT3G25190.1	21798944
AT3G60600.1	VIT_12s0055g00870.t01	AT3G25190.1	21798944
AT3G60600.1	VIT_08s0007g01510.t01	AT3G54020.1	21798944
AT3G60600.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT3G60600.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944
AT3G60600.1	VIT_03s0038g02520.t01	AT4G35100.1	21798944
AT3G60600.1	VIT_03s0038g03900.t01	AT4G38250.1	21798944
AT3G60600.1	VIT_01s0011g03390.t01	AT4G39670.1	18845362
AT3G60600.1	VIT_16s0100g00640.t01	AT5G07250.1	21798944
AT3G60600.1	VIT_06s0004g01050.t01	AT5G19875.1	21798944
AT3G60600.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT3G60600.1	VIT_00s0245g00010.t01	AT5G24290.1	21798944
AT3G60600.1	VIT_00s0245g00030.t01	AT5G24290.1	21798944
AT3G60600.1	VIT_00s0267g00030.t01	AT5G24290.1	21798944
AT3G60600.1	VIT_17s0000g00110.t01	AT5G51010.1	21798944
AT3G60600.1	VIT_19s0015g01110.t01	AT5G56020.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090910.2.1	Tomato	nucleus	75.31	77.25
KRH65384	Soybean	cytosol	76.15	75.52
KRH76164	Soybean	endoplasmic reticulum	74.9	74.27
Bra003313.1-P	Field mustard	cytosol	69.04	73.99
AT2G45140.1	Thale cress	cytosol	73.22	73.22
CDY37029	Canola	cytosol, golgi, plasma membrane	73.22	73.22
CDX89063	Canola	cytosol, golgi, plasma membrane	73.22	73.22
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	72.8	72.8
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	72.8	72.8
CDY41153	Canola	cytosol	72.38	72.69
CDX71796	Canola	cytosol	72.38	72.69
CDY27392	Canola	cytosol, golgi, plasma membrane	72.38	72.38
CDX83400	Canola	cytosol, nucleus, plasma membrane	72.8	72.2
CDX67837	Canola	cytosol, golgi, plasma membrane	72.38	72.08
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	72.38	72.08
CDY48365	Canola	cytosol	71.97	71.97
Bra007547.1-P	Field mustard	cytosol	71.55	71.85
CDX95631	Canola	cytosol, golgi, plasma membrane	72.38	71.78
Solyc10g018350.1.1	Tomato	cytosol	71.13	71.43
CDY56247	Canola	cytosol	71.55	71.25
CDY57247	Canola	cytosol	71.13	70.83
AT3G60600.1	Thale cress	cytosol	71.55	66.8
VIT_02s0154g00500.t01	Wine grape	cytosol, nucleus, plasma membrane	65.69	65.97
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	65.27	65.27
GSMUA_Achr5P20880_001	Banana	cytosol	65.27	65.27
VIT_13s0106g00400.t01	Wine grape	cytosol	36.82	64.71
VIT_15s0048g00600.t01	Wine grape	cytosol, nucleus, plasma membrane	64.02	64.02
EES14570	Sorghum	cytosol, nucleus, plasma membrane	64.85	63.52
Os08t0156700-01	Rice	plasma membrane	64.44	63.37
Zm00001d049553_P001	Maize	plasma membrane	64.44	63.11
GSMUA_Achr1P20280_001	Banana	cytosol	56.49	63.08
TraesCS7D01G296400.1	Wheat	cytosol	63.18	62.14
TraesCS7A01G300700.1	Wheat	cytosol	63.18	62.14
PGSC0003DMT400066920	Potato	cytosol	69.04	61.8
AT2G23830.1	Thale cress	cytosol	38.49	61.74
EES12559	Sorghum	cytosol	62.34	59.84
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	55.65	58.59
Os04t0534400-01	Rice	cytosol	61.09	58.4
Zm00001d051288_P001	Maize	cytosol	53.97	57.33
Solyc06g034220.2.1	Tomato	nucleus	54.39	57.27
KXG31128	Sorghum	cytosol	53.56	56.89
TraesCS2A01G368500.1	Wheat	cytosol	59.0	56.63
HORVU2Hr1G091830.4	Barley	cytosol	59.0	56.63
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	53.97	56.58
Zm00001d017390_P001	Maize	cytosol	53.14	56.44
TraesCS2B01G385700.2	Wheat	cytosol	58.58	56.22
TraesCS2D01G365300.2	Wheat	cytosol	58.58	56.22
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	53.56	56.14
TraesCS6D01G220300.1	Wheat	cytosol	53.56	56.14
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	53.14	55.7
GSMUA_Achr8P11120_001	Banana	cytosol	64.44	55.0
GSMUA_Achr11P...	Banana	cytosol	43.93	52.5
Bra035442.1-P	Field mustard	cytosol	23.01	50.93
HORVU7Hr1G071270.2	Barley	mitochondrion	62.34	50.51
Os02t0643000-01	Rice	plasma membrane	53.14	49.03
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	61.09	48.99
PGSC0003DMT400076826	Potato	cytosol	12.13	48.33
CDY44556	Canola	cytosol, extracellular, plastid	18.41	43.14
Zm00001d036342_P001	Maize	cytosol	42.26	40.4
VIT_05s0020g01970.t01	Wine grape	cytosol	47.7	38.91
VIT_14s0030g00730.t01	Wine grape	cytosol	46.44	33.04
VIT_00s0287g00080.t01	Wine grape	extracellular	27.2	18.68

Protein Annotations

EntrezGene:100257387	wikigene:100257387	Gene3D:2.60.40.10	MapMan:20.7.1	ProteinID:CBI38911	ProteinID:CBI38911.3
ncoils:Coil	UniProt:D7U7Y2	EMBL:FN596739	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	EntrezGene:LOC100257387	wikigene:LOC100257387	InterPro:MSP_dom	PFAM:PF00635
PIRSF:PIRSF019693	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf	SUPFAM:SSF49354
TIGR:TC60577	TMHMM:TMhelix	UniParc:UPI00015CA5D1	InterPro:VAP	ArrayExpress:VIT_15s0048g00220	EnsemblPlantsGene:VIT_15s0048g00220
EnsemblPlants:VIT_15s0048g00220.t01	unigene:Vvi.11914	RefSeq:XP_002274894	RefSeq:XP_002274894.2	SEG:seg	:

Description

No Description!

Coordinates

chr15:+:14343606..14350308

Molecular Weight (calculated)

26639.9 Da

IEP (calculated)

8.463

GRAVY (calculated)

-0.481

Length

239 amino acids

Sequence
(BLAST)

001: MSTGELLSIE PQELQFPFEL RKQISCSLQL SNKTDNFVAF KVKTTNPKKY CVRPNTGVVM PRSTCDVIVT MQAQRETPQD MQCKDKFLLQ SAIASPGATA
101: KDITSDMFNK EAGNRVEECK LRVAYVPPPQ PPSPVREGSE EGSSPRASVS DNGNINASEF TAVSRAYVEP QDNSSEARAL ISKLTEEKKS AIQQNNKLQQ
201: ELEFLRRESN RSRNGSLSFI YFILVGLLGL LMGYLMKMT

Best Arabidopsis Sequence Match ( AT2G45140.1 )
(BLAST)

001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT

Arabidopsis Description

PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.