Factsheet for VIT_02s0025g05160.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 6
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, mitochondrion, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_06s0009g01620.t01
VIT_06s0080g00970.t01
VIT_10s0003g01830.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12390.1	VIT_06s0009g01620.t01	AT2G27080.1	21798944
AT1G12390.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT1G12390.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT1G12390.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT1G62880.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G62880.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060550.2.1	Tomato	extracellular, plasma membrane, vacuole	77.54	76.98
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	77.54	76.98
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	76.09	76.64
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	74.64	75.18
KRH77425	Soybean	plasma membrane	71.74	74.44
CDY21049	Canola	endoplasmic reticulum, extracellular, plasma membrane	71.74	72.26
CDY31264	Canola	endoplasmic reticulum, extracellular, plasma membrane	71.01	71.53
AT1G12390.1	Thale cress	endoplasmic reticulum, extracellular	70.29	70.8
CDY26562	Canola	endoplasmic reticulum, extracellular, vacuole	70.29	70.8
CDY15996	Canola	endoplasmic reticulum	69.57	70.07
KRH28013	Soybean	cytosol	55.8	70.0
GSMUA_Achr9P00470_001	Banana	plasma membrane	67.39	69.4
CDX98068	Canola	endoplasmic reticulum, extracellular, vacuole	68.84	69.34
CDY30076	Canola	endoplasmic reticulum, extracellular, vacuole	68.84	69.34
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	68.84	69.34
AT1G62880.1	Thale cress	endoplasmic reticulum, extracellular	68.84	69.34
CDY45964	Canola	endoplasmic reticulum, plasma membrane, vacuole	68.12	69.12
VIT_15s0048g00890.t01	Wine grape	endoplasmic reticulum, extracellular	66.67	68.66
GSMUA_Achr3P11390_001	Banana	plasma membrane	50.0	68.32
Solyc08g007510.2.1	Tomato	extracellular, plasma membrane, vacuole	68.12	67.63
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	68.12	67.63
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	63.77	65.67
Bra039259.1-P	Field mustard	endoplasmic reticulum	53.62	65.49
AT1G12340.1	Thale cress	extracellular, plasma membrane, plastid	60.87	65.12
EER87801	Sorghum	endoplasmic reticulum	63.04	64.44
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	62.32	64.18
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	62.32	64.18
CDY32198	Canola	plasma membrane	51.45	62.83
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	36.96	61.45
AT4G12090.1	Thale cress	endoplasmic reticulum	52.17	53.33
GSMUA_Achr10P...	Banana	plasma membrane	60.87	53.16
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	50.0	51.11
CDY04395	Canola	endoplasmic reticulum, extracellular	50.0	51.11
CDY47431	Canola	endoplasmic reticulum, extracellular	50.0	51.11
Bra016774.1-P	Field mustard	plasma membrane	60.87	48.55
VIT_08s0007g07860.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	45.65	48.09
Bra027009.1-P	Field mustard	plasma membrane	70.29	47.09
CDY45478	Canola	plasma membrane	66.67	37.86

Protein Annotations

EntrezGene:100258514	wikigene:100258514	MapMan:35.1	EMBL:AM485644	ProteinID:CAN64319	ProteinID:CAN64319.1
ProteinID:CBI34819	ProteinID:CBI34819.3	InterPro:Cornichon	UniProt:D7TWE4	EMBL:FN596251	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	EntrezGene:LOC100258514
wikigene:LOC100258514	PFAM:PF03311	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18	SMART:SM01398	TIGR:TC52854
TMHMM:TMhelix	UniParc:UPI00015CE6D2	ArrayExpress:VIT_02s0025g05160	EnsemblPlantsGene:VIT_02s0025g05160	EnsemblPlants:VIT_02s0025g05160.t01	unigene:Vvi.13749
RefSeq:XP_002266561	RefSeq:XP_002266561.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:4638015..4641640

Molecular Weight (calculated)

16514.5 Da

IEP (calculated)

5.035

GRAVY (calculated)

0.614

Length

138 amino acids

Sequence
(BLAST)

001: MGDLFAWIFS FFILIALLVL VVYQLMCLAD LEFDYINPYD SASRINKVVL PEFITQGVLC LFYSLTGHWF MSLLCGPYLY YNVRLYQRRQ HLIDVTEIFN
101: LLNWEKKQRL FKLGYLIFLL FLSIFWMILS ALEDHDND

Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)

001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED

Arabidopsis Description

Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.