Factsheet for PGSC0003DMT400032506

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400005086
PGSC0003DMT400015077
PGSC0003DMT400022474
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12390.1	PGSC0003DMT400005086	AT2G27080.1	21798944
AT1G12390.1	PGSC0003DMT400022474	AT2G27080.1	21798944
AT1G12390.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G12390.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G12390.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G12390.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT1G62880.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G62880.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G62880.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007510.2.1	Tomato	extracellular, plasma membrane, vacuole	97.12	97.12
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	71.94	71.94
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	67.63	68.12
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	62.59	63.5
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	61.87	62.77
GSMUA_Achr3P11390_001	Banana	plasma membrane	43.88	60.4
KRH77425	Soybean	plasma membrane	57.55	60.15
KRH28013	Soybean	cytosol	47.48	60.0
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	57.55	59.7
CDY21049	Canola	endoplasmic reticulum, extracellular, plasma membrane	58.27	59.12
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	56.83	58.96
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	56.83	58.96
GSMUA_Achr9P00470_001	Banana	plasma membrane	56.83	58.96
CDY26562	Canola	endoplasmic reticulum, extracellular, vacuole	57.55	58.39
CDY31264	Canola	endoplasmic reticulum, extracellular, plasma membrane	57.55	58.39
PGSC0003DMT400033255	Potato	endoplasmic reticulum, plasma membrane, vacuole	45.32	57.8
AT1G12390.1	Thale cress	endoplasmic reticulum, extracellular	56.83	57.66
AT1G62880.1	Thale cress	endoplasmic reticulum, extracellular	56.83	57.66
CDY15996	Canola	endoplasmic reticulum	56.83	57.66
PGSC0003DMT400033256	Potato	endoplasmic reticulum, extracellular, vacuole	55.4	57.46
CDY45964	Canola	endoplasmic reticulum, plasma membrane, vacuole	56.12	57.35
PGSC0003DMT400018058	Potato	endoplasmic reticulum	54.68	56.72
Bra039259.1-P	Field mustard	endoplasmic reticulum	46.04	56.64
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	33.81	56.63
AT1G12340.1	Thale cress	extracellular, plasma membrane, plastid	52.52	56.59
CDY30076	Canola	endoplasmic reticulum, extracellular, vacuole	55.4	56.2
CDX98068	Canola	endoplasmic reticulum, extracellular, vacuole	55.4	56.2
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	55.4	56.2
CDY32198	Canola	plasma membrane	45.32	55.75
EER87801	Sorghum	endoplasmic reticulum	53.96	55.56
GSMUA_Achr10P...	Banana	plasma membrane	53.96	47.47
AT4G12090.1	Thale cress	endoplasmic reticulum	44.6	45.93
CDY04395	Canola	endoplasmic reticulum, extracellular	42.45	43.7
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	42.45	43.7
CDY47431	Canola	endoplasmic reticulum, extracellular	42.45	43.7
Bra016774.1-P	Field mustard	plasma membrane	51.08	41.04
Bra027009.1-P	Field mustard	plasma membrane	58.99	39.81
CDY45478	Canola	plasma membrane	55.4	31.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400032506	EnsemblPlantsGene:PGSC0003DMG400012484	EntrezGene:102605899	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18
PFAM:PF03311	PGSC:PGSC0003DMG400012484	RefSeq:XP_006358363.1	SEG:seg	SMART:SM01398	TMHMM:TMhelix
UniParc:UPI000295BFDC	UniProt:M1AXJ1	MapMan:35.1	:	:	:

Description

Cornichon family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012484]

Coordinates

chr8:-:400996..406104

Molecular Weight (calculated)

16565.8 Da

IEP (calculated)

4.759

GRAVY (calculated)

0.830

Length

139 amino acids

Sequence
(BLAST)

001: MGDMLIWLLL FFIVVAILVM VIFQLISLTD LEFDYINPYE TASRINKVVL PEFITQGVLC FLYLVTGHWA MSLYCIPYLY YNVNLYMQRR HLIDVTEIFN
101: MLSWEKKQRI FKLAHIIILL VISLFWVIYS ALEDDELNL

Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)

001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED

Arabidopsis Description

Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.