Factsheet for Bra019762.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000526.1-P
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra012567.1-P
Bra013361.1-P
Bra014481.1-P
Bra020182.1-P
Bra026110.1-P
Bra034321.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12390.1	Bra026110.1-P	AT1G15760.1	21798944
AT1G12390.1	Bra000526.1-P	AT2G27080.1	21798944
AT1G12390.1	Bra034321.1-P	AT2G27080.1	21798944
AT1G12390.1	Bra003423.1-P	AT3G60600.1	21798944
AT1G12390.1	Bra007547.1-P	AT3G60600.1	21798944
AT1G12390.1	Bra014481.1-P	AT3G60600.1	21798944
AT1G12390.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G12390.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G12390.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G12390.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G12390.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30076	Canola	endoplasmic reticulum, extracellular, vacuole	100.0	100.0
CDX98068	Canola	endoplasmic reticulum, extracellular, vacuole	100.0	100.0
AT1G12390.1	Thale cress	endoplasmic reticulum, extracellular	93.43	93.43
AT1G12340.1	Thale cress	extracellular, plasma membrane, plastid	75.91	80.62
Bra039259.1-P	Field mustard	endoplasmic reticulum	57.66	69.91
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	70.07	69.06
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	69.34	68.84
Solyc06g060550.2.1	Tomato	extracellular, plasma membrane, vacuole	68.61	67.63
KRH77425	Soybean	plasma membrane	63.5	65.41
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	62.77	62.77
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	62.77	62.77
KRH28013	Soybean	cytosol	50.37	62.73
GSMUA_Achr3P11390_001	Banana	plasma membrane	42.34	57.43
Bra016774.1-P	Field mustard	plasma membrane	70.8	56.07
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	56.2	55.4
GSMUA_Achr9P00470_001	Banana	plasma membrane	54.01	55.22
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	54.01	55.22
Solyc08g007510.2.1	Tomato	extracellular, plasma membrane, vacuole	55.47	54.68
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	53.28	54.48
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	53.28	54.48
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	32.85	54.22
EER87801	Sorghum	endoplasmic reticulum	53.28	54.07
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	50.37	51.11
Bra027009.1-P	Field mustard	plasma membrane	75.91	50.49
GSMUA_Achr10P...	Banana	plasma membrane	50.37	43.67
Bra034769.1-P	Field mustard	endoplasmic reticulum	40.88	38.36

Protein Annotations

EnsemblPlants:Bra019762.1	EnsemblPlants:Bra019762.1-P	EnsemblPlantsGene:Bra019762	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18
PFAM:PF03311	SMART:SM01398	TMHMM:TMhelix	UniParc:UPI000189CFD8	UniProt:M4DTB9	MapMan:35.1

Description

AT1G12390 (E=1e-074) | cornichon family protein

Coordinates

chrA06:-:4560913..4561765

Molecular Weight (calculated)

16494.4 Da

IEP (calculated)

4.522

GRAVY (calculated)

0.723

Length

137 amino acids

Sequence
(BLAST)

001: MGDIWAWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SAARINYVVL PEFIVQGVLC VFYLFTGHWF MAILCLPYMY YNFQLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIILNL FLTIFWMIYS ALDDYED

Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)

001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED

Arabidopsis Description

Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.