Factsheet for Bra039259.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 6
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P
Bra030034.1-P
Bra032817.1-P
Bra033296.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62880.1	Bra033296.1-P	AT1G01010.1	21798944
AT1G62880.1	Bra030034.1-P	AT1G27300.1	21798944
AT1G62880.1	Bra032817.1-P	AT1G27300.1	21798944
AT1G62880.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G62880.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G62880.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32198	Canola	plasma membrane	89.38	89.38
AT1G62880.1	Thale cress	endoplasmic reticulum, extracellular	75.22	62.04
KRH28013	Soybean	cytosol	56.64	58.18
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	69.91	57.66
GSMUA_Achr3P11390_001	Banana	plasma membrane	50.44	56.44
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	65.49	53.62
KRH77425	Soybean	plasma membrane	60.18	51.13
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	37.17	50.6
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	61.06	50.37
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	61.95	50.36
GSMUA_Achr9P00470_001	Banana	plasma membrane	58.41	49.25
Solyc06g060550.2.1	Tomato	extracellular, plasma membrane, vacuole	60.18	48.92
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	59.29	48.91
EER87801	Sorghum	endoplasmic reticulum	56.64	47.41
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	54.87	46.27
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	54.87	46.27
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	54.87	46.27
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	56.64	46.04
Solyc08g007510.2.1	Tomato	extracellular, plasma membrane, vacuole	56.64	46.04
Bra016774.1-P	Field mustard	plasma membrane	69.03	45.09
Bra027009.1-P	Field mustard	plasma membrane	77.88	42.72
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	46.02	38.52
GSMUA_Achr10P...	Banana	plasma membrane	52.21	37.34
Bra034769.1-P	Field mustard	endoplasmic reticulum	39.82	30.82

Protein Annotations

EnsemblPlants:Bra039259.1	EnsemblPlants:Bra039259.1-P	EnsemblPlantsGene:Bra039259	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18
PFAM:PF03311	SMART:SM01398	TMHMM:TMhelix	UniParc:UPI000253E853	UniProt:M4FDT8	MapMan:35.1

Description

AT1G62880 (E=5e-046) | cornichon family protein

Coordinates

chrScaffold000162:-:314517..314964

Molecular Weight (calculated)

13655.9 Da

IEP (calculated)

4.945

GRAVY (calculated)

0.637

Length

113 amino acids

Sequence
(BLAST)

001: MNEPFFLIYL QLICLADLEF DYINPYDSSS RINSVVLPEF VLQGFLCLFF LVTGHWFMAL HGLPYLYYNF QICLKNHYLI DVTEIFNLLD WETKKRLFKL
101: AYMILTLFLT IFW

Best Arabidopsis Sequence Match ( AT1G62880.1 )
(BLAST)

001: MGEVWTWIIS FLILITLLGL IVYQLISLAD LEFDYINPYD SASRINFVVL PESILQGFLC VFYLVTGHWF MALLCVPYLY YNFHLYSRKQ HLIDVTEIFN
101: LLDWEKKKRL FKLAYIILTL FLTIFWLIYS TLDDYED

Arabidopsis Description

Protein cornichon homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWT5]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.