Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039259.1-P | Field mustard | endoplasmic reticulum | 89.38 | 89.38 |
| CDY45964 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 81.42 | 67.65 |
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 79.65 | 65.69 |
| CDY31264 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 76.99 | 63.5 |
| CDY21049 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 76.11 | 62.77 |
| CDY26562 | Canola | endoplasmic reticulum, extracellular, vacuole | 76.11 | 62.77 |
| CDY15996 | Canola | endoplasmic reticulum | 75.22 | 62.04 |
| CDX98068 | Canola | endoplasmic reticulum, extracellular, vacuole | 73.45 | 60.58 |
| CDY30076 | Canola | endoplasmic reticulum, extracellular, vacuole | 73.45 | 60.58 |
| KRH28013 | Soybean | cytosol | 56.64 | 58.18 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 49.56 | 55.45 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 62.83 | 51.45 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 61.06 | 49.64 |
| KRH77425 | Soybean | plasma membrane | 58.41 | 49.62 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 60.18 | 48.92 |
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 59.29 | 48.91 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 35.4 | 48.19 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 56.64 | 47.76 |
| KRH04043 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 57.52 | 47.45 |
| EER87801 | Sorghum | endoplasmic reticulum | 54.87 | 45.93 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 53.98 | 45.52 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 53.98 | 45.52 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 53.98 | 45.52 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 55.75 | 45.32 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 55.75 | 45.32 |
| CDY04395 | Canola | endoplasmic reticulum, extracellular | 44.25 | 37.04 |
| CDY47431 | Canola | endoplasmic reticulum, extracellular | 44.25 | 37.04 |
| GSMUA_Achr10P... | Banana | plasma membrane | 50.44 | 36.08 |
| CDY45478 | Canola | plasma membrane | 76.11 | 35.39 |
| CDY08445 | Canola | endoplasmic reticulum | 42.48 | 32.88 |
| CDY50566 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.48 | 32.88 |
| CDY52620 | Canola | endoplasmic reticulum | 41.59 | 32.19 |
| CDY42135 | Canola | endoplasmic reticulum | 40.71 | 31.51 |
Protein Annotations
| EnsemblPlants:CDY32198 | EnsemblPlantsGene:GSBRNA2T00051606001 | GO:A0A078H5W4 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Cornichon | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 |
| PFAM:PF03311 | ProteinID:CDY32198 | ProteinID:CDY32198.1 | SEG:seg | SMART:SM01398 | TMHMM:TMhelix |
| UniParc:UPI0004EDF4CF | UniProt:A0A078H5W4 | MapMan:35.1 | : | : | : |
Description
BnaA03g54690DBnaA03g54690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5W4]
Coordinates
chrLK032289:-:141064..141592
Molecular Weight (calculated)
13568.6 Da
IEP (calculated)
4.369
GRAVY (calculated)
0.477
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLICLADLE FDYINPYDSS SRINSVVLPE FVLQGFLCLF FLVTGHWALH GLPYLYYNFQ ICLKNHYLID VTEIFNLLDW ETKKRLFKLA YMILTLFLTI
101: FWLIYSTVDD YEE
101: FWLIYSTVDD YEE
001: MRGVTETDKL ANGIFHLVCL ADLEFDYINP YDSASRINSV VLPEFIVQGV LCVFYLLTGH WFMTLLCLPY LYYNFHLYSK RQHLVDVTEI FNLLNWEKKK
101: RLFKLAYIVL NLFLTIFWMI YSALDDYED
101: RLFKLAYIVL NLFLTIFWMI YSALDDYED
Arabidopsis Description
Probable protein cornichon homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDD7]
SUBAcon: [plasma membrane,plastid,extracellular]
SUBAcon: [plasma membrane,plastid,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.