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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 5
  • plasma membrane 7
  • golgi 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:golgi, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
EER87676
EER90109
EES05123
EES09185
EES11537
EES12559
EES14570
EES15581
KXG31128
OQU75953
OQU80824
OQU87732

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12390.1 EER90109 AT1G15760.1 21798944
AT1G12390.1 EES11537 AT1G15760.1 21798944
AT1G12390.1 OQU75953 AT1G15760.1 21798944
AT1G12390.1 OQU80824 AT1G15760.1 21798944
AT1G12390.1 EES09185 AT2G27080.1 21798944
AT1G12390.1 EES15581 AT2G27080.1 21798944
AT1G12390.1 OQU87732 AT2G27080.1 21798944
AT1G12390.1 EES12559 AT3G60600.1 21798944
AT1G12390.1 EES14570 AT3G60600.1 21798944
AT1G12390.1 KXG31128 AT3G60600.1 21798944
AT1G62880.1 EER87676 AT1G01010.1 21798944
AT1G62880.1 EES05123 AT1G27300.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os06t0136500-01 Rice golgi, plasma membrane, vacuole 58.52 95.18
TraesCS7A01G075500.1 Wheat endoplasmic reticulum 88.89 89.55
TraesCS7D01G071100.1 Wheat endoplasmic reticulum 87.41 88.06
TraesCS4A01G373700.1 Wheat endoplasmic reticulum 87.41 88.06
GSMUA_Achr9P00470_001 Banana plasma membrane 78.52 79.1
GSMUA_Achr3P11390_001 Banana plasma membrane 53.33 71.29
VIT_02s0025g05160.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 64.44 63.04
VIT_15s0048g00890.t01 Wine grape endoplasmic reticulum, extracellular 60.74 61.19
KRH57311 Soybean endoplasmic reticulum, extracellular, plasma membrane 61.48 60.58
GSMUA_Achr10P... Banana plasma membrane 69.63 59.49
KRH77425 Soybean plasma membrane 58.52 59.4
KRH04043 Soybean endoplasmic reticulum, plasma membrane, vacuole 60.0 59.12
PGSC0003DMT400045318 Potato endoplasmic reticulum, extracellular, vacuole 60.74 58.99
Solyc06g060550.2.1 Tomato extracellular, plasma membrane, vacuole 60.74 58.99
KRH28013 Soybean cytosol 46.67 57.27
PGSC0003DMT400033255 Potato endoplasmic reticulum, plasma membrane, vacuole 45.93 56.88
Bra039259.1-P Field mustard endoplasmic reticulum 47.41 56.64
CDY31264 Canola endoplasmic reticulum, extracellular, plasma membrane 57.04 56.2
PGSC0003DMT400018058 Potato endoplasmic reticulum 55.56 55.97
CDY21049 Canola endoplasmic reticulum, extracellular, plasma membrane 56.3 55.47
Solyc05g051030.2.1 Tomato plasma membrane 55.56 55.15
CDY32198 Canola plasma membrane 45.93 54.87
CDY26562 Canola endoplasmic reticulum, extracellular, vacuole 55.56 54.74
AT1G12390.1 Thale cress endoplasmic reticulum, extracellular 55.56 54.74
CDY15996 Canola endoplasmic reticulum 54.81 54.01
PGSC0003DMT400032506 Potato endoplasmic reticulum, extracellular, vacuole 55.56 53.96
PGSC0003DMT400033256 Potato endoplasmic reticulum, extracellular, vacuole 53.33 53.73
CDX98068 Canola endoplasmic reticulum, extracellular, vacuole 54.07 53.28
Bra019762.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 54.07 53.28
CDY30076 Canola endoplasmic reticulum, extracellular, vacuole 54.07 53.28
Solyc08g007510.2.1 Tomato extracellular, plasma membrane, vacuole 54.81 53.24
CDY45964 Canola endoplasmic reticulum, plasma membrane, vacuole 53.33 52.94
AT1G12340.1 Thale cress extracellular, plasma membrane, plastid 50.37 52.71
AT1G62880.1 Thale cress endoplasmic reticulum, extracellular 52.59 51.82
KRH40600 Soybean endoplasmic reticulum, plasma membrane, vacuole 46.67 46.32
KRH00566 Soybean endoplasmic reticulum, plasma membrane, vacuole 45.19 44.85
AT4G12090.1 Thale cress endoplasmic reticulum 44.44 44.44
Bra033120.1-P Field mustard endoplasmic reticulum, extracellular 43.7 43.7
CDY47431 Canola endoplasmic reticulum, extracellular 43.7 43.7
CDY04395 Canola endoplasmic reticulum, extracellular 43.7 43.7
EES16032 Sorghum endoplasmic reticulum 45.19 40.94
Bra016774.1-P Field mustard plasma membrane 48.89 38.15
Bra027009.1-P Field mustard plasma membrane 54.81 35.92
CDY45478 Canola plasma membrane 52.59 29.22
Protein Annotations
EnsemblPlants:EER87801EnsemblPlantsGene:SORBI_3010G026700GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0016192InterPro:CornichonPANTHER:PTHR12290PANTHER:PTHR12290:SF18PFAM:PF03311
ProteinID:EER87801ProteinID:EER87801.1RefSeq:XP_002436434.1SEG:segSMART:SM01398TMHMM:TMhelix
UniParc:UPI0001A88F05UniProt:C5Z3F8MapMan:35.1:::
Description
hypothetical protein
Coordinates
chr10:+:2154381..2157762
Molecular Weight (calculated)
16050.1 Da
IEP (calculated)
5.683
GRAVY (calculated)
0.821
Length
135 amino acids
Sequence
(BLAST)
001: MVFVWLTAFF LVVALIVLVI YQLMCLADLE FDYINPFDSS SRINKVVMPE FVLQALLSVL FLLSGHWAMF LLSLPLVYYN YTLYQRRQHL VDVTEIFNQL
101: GREKKRRLFK IVSLIVLLFL SLFWMIWSVL SEEDE
Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.