Factsheet for PGSC0003DMT400033255

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
plasma membrane 3
plastid 1
extracellular 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033256	Potato	endoplasmic reticulum, extracellular, vacuole	100.0	81.34
PGSC0003DMT400018058	Potato	endoplasmic reticulum	78.9	64.18
GSMUA_Achr3P11390_001	Banana	plasma membrane	54.13	58.42
GSMUA_Achr9P00470_001	Banana	plasma membrane	62.39	50.75
VIT_15s0048g00890.t01	Wine grape	endoplasmic reticulum, extracellular	61.47	50.0
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	59.63	46.76
EER87801	Sorghum	endoplasmic reticulum	56.88	45.93
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	57.8	45.32
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	52.29	42.54
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	52.29	42.54
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	52.29	42.54
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	32.11	42.17
KRH40600	Soybean	endoplasmic reticulum, plasma membrane, vacuole	51.38	41.18
KRH00566	Soybean	endoplasmic reticulum, plasma membrane, vacuole	50.46	40.44
GSMUA_Achr10P...	Banana	plasma membrane	55.96	38.61

Protein Annotations

EnsemblPlants:PGSC0003DMT400033255	EnsemblPlantsGene:PGSC0003DMG402012773	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18	PFAM:PF03311
PGSC:PGSC0003DMG402012773	SMART:SM01398	TMHMM:TMhelix	UniParc:UPI00029549A8	UniProt:M1AYV0	MapMan:35.1

Description

Cornichon family protein [Source:PGSC_GENE;Acc:PGSC0003DMG402012773]

Coordinates

chr1:+:70750076..70753305

Molecular Weight (calculated)

12738.9 Da

IEP (calculated)

5.010

GRAVY (calculated)

0.609

Length

109 amino acids

Sequence
(BLAST)

001: MCLADLENDY VNPYDSASEI NILVVPEFVL QGALCFLHLV MGHWLMCLVC LPYLYYDVKV YTDRRHLLDV TEIFNQLPWE KKIRLFKLGY LGIHLAISII
101: CMIWSIVAE

Best Arabidopsis Sequence Match ( AT1G12340.1 )
(BLAST)

001: MRGVTETDKL ANGIFHLVCL ADLEFDYINP YDSASRINSV VLPEFIVQGV LCVFYLLTGH WFMTLLCLPY LYYNFHLYSK RQHLVDVTEI FNLLNWEKKK
101: RLFKLAYIVL NLFLTIFWMI YSALDDYED

Arabidopsis Description

Probable protein cornichon homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDD7]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.