Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 68.66 | 66.67 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 49.25 | 65.35 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 63.43 | 63.43 |
| PGSC0003DMT400018058 | Potato | endoplasmic reticulum | 63.43 | 63.43 |
| Solyc05g051030.2.1 | Tomato | plasma membrane | 63.43 | 62.5 |
| PGSC0003DMT400033255 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 50.0 | 61.47 |
| EER87801 | Sorghum | endoplasmic reticulum | 61.19 | 60.74 |
| PGSC0003DMT400033256 | Potato | endoplasmic reticulum, extracellular, vacuole | 59.7 | 59.7 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 58.96 | 58.96 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 58.96 | 58.96 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 58.96 | 58.96 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 35.07 | 56.63 |
| KRH40600 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 50.75 | 50.0 |
| KRH00566 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 50.0 | 49.26 |
| GSMUA_Achr10P... | Banana | plasma membrane | 55.97 | 47.47 |
| VIT_08s0007g07860.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 44.78 | 45.8 |
Protein Annotations
| EntrezGene:100260883 | wikigene:100260883 | MapMan:35.1 | ProteinID:CBI38856 | ProteinID:CBI38856.3 | InterPro:Cornichon |
| UniProt:D7U7S7 | EMBL:FN596739 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | EntrezGene:LOC100260883 | wikigene:LOC100260883 | PFAM:PF03311 | PANTHER:PTHR12290 |
| PANTHER:PTHR12290:SF18 | SMART:SM01398 | TIGR:TC54187 | TMHMM:TMhelix | UniParc:UPI0001984D36 | ArrayExpress:VIT_15s0048g00890 |
| EnsemblPlantsGene:VIT_15s0048g00890 | EnsemblPlants:VIT_15s0048g00890.t01 | unigene:Vvi.6466 | RefSeq:XP_002279334 | RefSeq:XP_002279334.1 | : |
Description
No Description!
Coordinates
chr15:-:15048074..15051214
Molecular Weight (calculated)
15927.0 Da
IEP (calculated)
7.622
GRAVY (calculated)
0.620
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLMSWLLS FFFHGSLVGL IGYQLMCLAD LEFDYMNPYD SSSRINRVIL PEFIIQGVLC LIHLVTGHWF MFLVSLPYLY YNVRLYMRRQ HLLDVTEIFN
101: QLNREKQLRI FKLVHLIVLL TTSIFWMIWS IGGI
101: QLNREKQLRI FKLVHLIVLL TTSIFWMIWS IGGI
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.