Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 98.51 | 98.51 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 56.72 | 91.57 |
| EER87801 | Sorghum | endoplasmic reticulum | 89.55 | 88.89 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 73.88 | 73.88 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 50.0 | 66.34 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 65.67 | 63.77 |
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 62.69 | 61.31 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 63.43 | 61.15 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 63.43 | 61.15 |
| KRH04043 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 61.19 | 59.85 |
| GSMUA_Achr10P... | Banana | plasma membrane | 70.15 | 59.49 |
| KRH77425 | Soybean | plasma membrane | 58.96 | 59.4 |
| VIT_15s0048g00890.t01 | Wine grape | endoplasmic reticulum, extracellular | 58.96 | 58.96 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 59.7 | 57.55 |
| KRH28013 | Soybean | cytosol | 47.01 | 57.27 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 58.96 | 56.83 |
| CDY31264 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 57.46 | 56.2 |
| CDY26562 | Canola | endoplasmic reticulum, extracellular, vacuole | 56.72 | 55.47 |
| AT1G12390.1 | Thale cress | endoplasmic reticulum, extracellular | 56.72 | 55.47 |
| CDY21049 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 56.72 | 55.47 |
| AT1G12340.1 | Thale cress | extracellular, plasma membrane, plastid | 52.99 | 55.04 |
| Bra039259.1-P | Field mustard | endoplasmic reticulum | 46.27 | 54.87 |
| CDY15996 | Canola | endoplasmic reticulum | 55.97 | 54.74 |
| CDY30076 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.22 | 54.01 |
| Bra019762.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 55.22 | 54.01 |
| CDX98068 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.22 | 54.01 |
| CDY32198 | Canola | plasma membrane | 45.52 | 53.98 |
| CDY45964 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 53.73 | 52.94 |
| PGSC0003DMT400033255 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 42.54 | 52.29 |
| PGSC0003DMT400018058 | Potato | endoplasmic reticulum | 52.24 | 52.24 |
| Solyc05g051030.2.1 | Tomato | plasma membrane | 52.99 | 52.21 |
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 52.99 | 51.82 |
| PGSC0003DMT400033256 | Potato | endoplasmic reticulum, extracellular, vacuole | 49.25 | 49.25 |
| KRH40600 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 47.01 | 46.32 |
| KRH00566 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 45.52 | 44.85 |
| AT4G12090.1 | Thale cress | endoplasmic reticulum | 42.54 | 42.22 |
| Bra033120.1-P | Field mustard | endoplasmic reticulum, extracellular | 41.04 | 40.74 |
| CDY04395 | Canola | endoplasmic reticulum, extracellular | 41.04 | 40.74 |
| CDY47431 | Canola | endoplasmic reticulum, extracellular | 41.04 | 40.74 |
| TraesCS5A01G104500.1 | Wheat | endoplasmic reticulum | 44.78 | 40.27 |
| Bra016774.1-P | Field mustard | plasma membrane | 50.0 | 38.73 |
| Bra027009.1-P | Field mustard | plasma membrane | 55.22 | 35.92 |
| CDY45478 | Canola | plasma membrane | 52.24 | 28.81 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G075500.1 | EnsemblPlantsGene:TraesCS7A01G075500 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016192 | InterPro:Cornichon |
| PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 | PFAM:PF03311 | SEG:seg | SMART:SM01398 | TMHMM:TMhelix |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:41435448..41438543
Molecular Weight (calculated)
15881.9 Da
IEP (calculated)
6.954
GRAVY (calculated)
0.843
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFVWLAAFF LVVALIVLVI FQLMCLADLE FDYINPFDSS SRINKVVMPE FIVQALLSAL FLLSGHWAMF LLSAPMVYYN YTLYQRRQHL VDVTEIFNHL
101: SREKKRRLFK IAALIVLLFL SLFWMIWSVL EEHE
101: SREKKRRLFK IAALIVLLFL SLFWMIWSVL EEHE
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.