Factsheet for TraesCS7D01G506000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

extracellular 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, extracellular, mitochondrion
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G026900.1
TraesCS2A01G197700.1
TraesCS2B01G040200.1
TraesCS2B01G225100.1
TraesCS2D01G029000.1
TraesCS2D01G205700.1
TraesCS4A01G272200.1
TraesCS4A01G415500.1
TraesCS4B01G041800.1
TraesCS4B01G316300.1
TraesCS4D01G039000.1
TraesCS4D01G312900.1
TraesCS7A01G190000.1
TraesCS7B01G095100.1
TraesCS7D01G191200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	TraesCS7A01G190000.1	AT3G20510.1	21798944
AT1G15760.1	TraesCS7B01G095100.1	AT3G20510.1	21798944
AT1G15760.1	TraesCS7D01G191200.1	AT3G20510.1	21798944
AT1G15760.1	TraesCS4A01G272200.1	AT4G09580.1	21798944
AT1G15760.1	TraesCS4B01G041800.1	AT4G09580.1	21798944
AT1G15760.1	TraesCS4D01G039000.1	AT4G09580.1	21798944
AT1G15760.1	TraesCS2A01G197700.1	AT4G14950.1	21798944
AT1G15760.1	TraesCS2B01G225100.1	AT4G14950.1	21798944
AT1G15760.1	TraesCS2D01G205700.1	AT4G14950.1	21798944
AT1G15760.1	TraesCS2A01G026900.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS2B01G040200.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS2D01G029000.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS4A01G415500.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS4B01G316300.1	AT5G43460.1	21798944
AT1G15760.1	TraesCS4D01G312900.1	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G432100.1	Wheat	cytosol	90.32	94.69
TraesCS7A01G515500.1	Wheat	cytosol, extracellular, mitochondrion	94.93	94.5
HORVU7Hr1G115240.1	Barley	cytosol, extracellular, mitochondrion	88.02	92.27
HORVU7Hr1G049610.2	Barley	cytosol, extracellular, plastid	86.64	91.71
Os06t0645500-01	Rice	cytosol, nucleus, peroxisome	69.12	63.03
EER90109	Sorghum	nucleus	60.83	59.46
Zm00001d046580_P001	Maize	cytosol	55.3	56.87
Zm00001d036740_P001	Maize	cytosol	49.77	53.73
GSMUA_Achr9P26950_001	Banana	cytosol	23.5	33.12
CDX87319	Canola	cytosol	26.73	32.77
Bra035174.1-P	Field mustard	cytosol	26.73	32.77
CDY39968	Canola	cytosol	26.27	32.2
TraesCS7D01G143100.1	Wheat	cytosol	34.1	31.9
TraesCS2D01G520300.1	Wheat	cytosol	30.41	31.73
CDX67952	Canola	cytosol	26.73	31.02
PGSC0003DMT400073435	Potato	cytosol	27.19	30.89
Bra003571.1-P	Field mustard	cytosol	26.27	30.48
AT1G80520.1	Thale cress	nucleus	26.73	30.21
KRH09696	Soybean	cytosol	27.19	30.1
GSMUA_Achr8P25150_001	Banana	cytosol	26.27	30.0
CDX79380	Canola	cytosol	26.73	29.9
KRH23610	Soybean	cytosol	26.27	29.69
GSMUA_Achr8P14710_001	Banana	cytosol	23.96	29.55
Solyc06g068310.1.1	Tomato	cytosol	26.27	29.53
OQU80824	Sorghum	plastid	27.19	29.06
Solyc03g117340.1.1	Tomato	cytosol	23.96	28.73
GSMUA_Achr1P09970_001	Banana	cytosol	25.35	28.65
GSMUA_Achr4P09380_001	Banana	cytosol	24.88	28.57
GSMUA_Achr8P17040_001	Banana	cytosol	23.04	28.41
PGSC0003DMT400084778	Potato	nucleus	23.96	27.81
AT1G15760.1	Thale cress	nucleus	25.81	27.72
CDY36586	Canola	nucleus	25.35	27.23
Bra026110.1-P	Field mustard	cytosol	25.35	27.23
PGSC0003DMT400073434	Potato	cytosol	16.59	26.87
CDY61373	Canola	cytosol	24.88	26.73
VIT_09s0002g08420.t01	Wine grape	golgi, plasma membrane	26.73	24.68
PGSC0003DMT400036834	Potato	nucleus	23.5	24.29
Solyc03g117310.1.1	Tomato	cytosol	23.5	24.29
KRH47406	Soybean	cytosol	22.12	23.65
PGSC0003DMT400078859	Potato	cytosol	25.81	22.13
KRH44503	Soybean	cytosol	22.12	22.12
Solyc07g007350.1.1	Tomato	cytosol	25.81	21.96
VIT_11s0118g00550.t01	Wine grape	cytosol	24.88	21.51
CDX93107	Canola	cytosol	23.5	20.56
Bra013153.1-P	Field mustard	cytosol	23.5	20.56
CDY50403	Canola	cytosol	23.5	20.56
AT2G12462.1	Thale cress	cytosol	23.04	20.08
KRH20227	Soybean	cytosol	22.58	16.61
KRH12842	Soybean	cytosol, nucleus, plastid	21.66	16.55
KRH37823	Soybean	nucleus	20.74	15.36
KRH03583	Soybean	nucleus	22.12	15.09

Protein Annotations

EnsemblPlants:TraesCS7D01G506000.1	EnsemblPlantsGene:TraesCS7D01G506000	Gene3D:1.10.150.50	PANTHER:PTHR33915	PANTHER:PTHR33915:SF4	SEG:seg
TIGR:cd09487	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:611135689..611136342

Molecular Weight (calculated)

22749.6 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.376

Length

217 amino acids

Sequence
(BLAST)

001: MDWYAWLSKA GLTPAATYEY GLLFSENELE PGDAPDFDHD LLKSMGIAVA KHRLEILKLA RKDAAAAASS QSSSSAAARL ARRAGRCIAR CARRLGGGGG
101: AGGRRYSSSS VTVVPRICNG AAGDVVVRAG AVRRRSSVKK MVLMITDGGV ASGGGGGGGV RFSGSQKASL MFQDCAYEDD DEDGAREEDE ERCSDGGTAG
201: GESEIKWDSM FQDLKPT

Best Arabidopsis Sequence Match ( AT1G80520.1 )
(BLAST)

001: MDWFSWLSRT NLEASLIYEY GLSFSNNELE YEDIAYFNHE FLQSMGISIA KHRLEILKLA RRDRKPSPLT ARSIFRVLIA IKKTGKCFSE HVRAWIRREE
101: SSRALVVVSR STSSSGNGRW KSARKKRLVM PSNGNGVKEE RLLLTNGTPC RLDSFSNPKV SSGYEDDDNH WGNKDVEEKI KWDSMFQNLK PT

Arabidopsis Description

Sterile alpha motif (SAM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9M8M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.