CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75108
CDX82243
CDY09041
CDY19635
CDY22723
CDY32939
CDY48052
CDY50267
CDY54866
CDY59304
CDY65222
CDY71352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15760.1	CDX82243	AT3G20510.1	21798944
AT1G15760.1	CDY19635	AT3G20510.1	21798944
AT1G15760.1	CDY65222	AT3G20510.1	21798944
AT1G15760.1	CDY71352	AT3G20510.1	21798944
AT1G15760.1	CDX75108	AT4G09580.1	21798944
AT1G15760.1	CDY48052	AT4G09580.1	21798944
AT1G15760.1	CDY09041	AT4G14950.1	21798944
AT1G15760.1	CDY22723	AT4G14950.1	21798944
AT1G15760.1	CDY50267	AT4G14950.1	21798944
AT1G15760.1	CDY54866	AT4G14950.1	21798944
AT1G15760.1	CDY32939	AT5G43460.1	21798944
AT1G15760.1	CDY59304	AT5G43460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36586	Canola	nucleus	97.52	97.52
AT1G15760.1	Thale cress	nucleus	77.72	77.72
CDX67952	Canola	cytosol	60.89	65.78
CDX79380	Canola	cytosol	60.89	63.4
CDY39968	Canola	cytosol	55.45	63.28
CDX87319	Canola	cytosol	54.95	62.71
GSMUA_Achr9P26950_001	Banana	cytosol	37.13	48.7
GSMUA_Achr8P14710_001	Banana	cytosol	35.64	40.91
GSMUA_Achr8P17040_001	Banana	cytosol	35.15	40.34
GSMUA_Achr8P25150_001	Banana	cytosol	34.65	36.84
GSMUA_Achr4P09380_001	Banana	cytosol	33.17	35.45
GSMUA_Achr1P09970_001	Banana	cytosol	32.67	34.38
Os04t0644100-01	Rice	cytosol	26.73	28.72
EES11537	Sorghum	cytosol	25.74	27.96
HORVU7Hr1G049610.2	Barley	cytosol, extracellular, plastid	26.24	25.85
TraesCS7B01G432100.1	Wheat	cytosol	26.24	25.6
HORVU7Hr1G115240.1	Barley	cytosol, extracellular, mitochondrion	26.24	25.6
Zm00001d046580_P001	Maize	cytosol	26.73	25.59
Zm00001d036740_P001	Maize	cytosol	25.25	25.37
TraesCS7D01G506000.1	Wheat	cytosol, extracellular, mitochondrion	26.73	24.88
HORVU2Hr1G114860.1	Barley	mitochondrion	13.86	24.78
EER90109	Sorghum	nucleus	26.73	24.32
Zm00001d002096_P001	Maize	cytosol	24.26	23.9
TraesCS7A01G515500.1	Wheat	cytosol, extracellular, mitochondrion	25.74	23.85
TraesCS2D01G520300.1	Wheat	cytosol	24.26	23.56
TraesCS2A01G518900.1	Wheat	cytosol	24.26	23.33
TraesCS2B01G547200.1	Wheat	cytosol	22.77	23.12
Os06t0645500-01	Rice	cytosol, nucleus, peroxisome	27.23	23.11
TraesCS7B01G044000.1	Wheat	cytosol	23.76	20.96
TraesCS7A01G141900.1	Wheat	cytosol	23.76	20.87
Zm00001d037494_P001	Maize	cytosol, extracellular, plastid	24.75	20.58
TraesCS7D01G143100.1	Wheat	cytosol	23.27	20.26
HORVU7Hr1G029260.1	Barley	cytosol	22.77	19.74
CDX93107	Canola	cytosol	23.76	19.35
CDY50403	Canola	cytosol	23.76	19.35
OQU75953	Sorghum	cytosol	24.26	18.56
Zm00001d045137_P001	Maize	plastid	13.86	16.37
OQU80824	Sorghum	plastid	14.85	14.78
Os06t0179100-00	Rice	cytosol, nucleus	17.33	11.55

Protein Annotations

EnsemblPlants:CDY61373	EnsemblPlantsGene:GSBRNA2T00033757001	Gene3D:1.10.150.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001660	InterPro:SAM	InterPro:SAM/pointed_sf	PANTHER:PTHR33915	PANTHER:PTHR33915:SF1	PFAM:PF07647
PFscan:PS50105	ProteinID:CDY61373	ProteinID:CDY61373.1	SUPFAM:SSF47769	UniParc:UPI0004EC980B	UniProt:A0A078J523
MapMan:35.2	:	:	:	:	:

Description

BnaC05g49840DBnaC05g49840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J523]

Coordinates

chrLK033990:+:8929..9537

Molecular Weight (calculated)

23458.1 Da

IEP (calculated)

9.996

GRAVY (calculated)

-0.583

Length

202 amino acids

Sequence
(BLAST)

001: MDWFSWLSRT NLEPCLIHEY SLSFSKNELE HEDIAYFNHE FLQSIGVSIA KHRLEILKLA RRERKRSPLL TSRSISRVVV AIKKTSRCVS DHVRAWIRCE
101: EESSRALVLV PKRSGGAGKW RGGFMKRNKR SVTPSNANGG GVHKQQEVLL LTNGTPCRID SFSSPMVFDY SFREEMAYKD NRQDTYLEEI KWDSMFQNLK
201: PT

Best Arabidopsis Sequence Match ( AT1G15760.1 )
(BLAST)

001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT

Arabidopsis Description

At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.