Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002096_P001 | Maize | cytosol | 64.52 | 58.54 |
| Os04t0644100-01 | Rice | cytosol | 50.0 | 49.47 |
| TraesCS2D01G520300.1 | Wheat | cytosol | 47.85 | 42.79 |
| TraesCS2A01G518900.1 | Wheat | cytosol | 46.24 | 40.95 |
| TraesCS2B01G547200.1 | Wheat | cytosol | 43.55 | 40.7 |
| HORVU2Hr1G114860.1 | Barley | mitochondrion | 19.89 | 32.74 |
| GSMUA_Achr9P26950_001 | Banana | cytosol | 26.88 | 32.47 |
| EER90109 | Sorghum | nucleus | 38.71 | 32.43 |
| GSMUA_Achr8P17040_001 | Banana | cytosol | 29.57 | 31.25 |
| GSMUA_Achr8P14710_001 | Banana | cytosol | 29.03 | 30.68 |
| KRH09696 | Soybean | cytosol | 32.26 | 30.61 |
| PGSC0003DMT400073434 | Potato | cytosol | 22.04 | 30.6 |
| Solyc03g117340.1.1 | Tomato | cytosol | 29.57 | 30.39 |
| PGSC0003DMT400073435 | Potato | cytosol | 30.65 | 29.84 |
| KRH23610 | Soybean | cytosol | 30.65 | 29.69 |
| Solyc06g068310.1.1 | Tomato | cytosol | 30.65 | 29.53 |
| GSMUA_Achr8P25150_001 | Banana | cytosol | 30.11 | 29.47 |
| PGSC0003DMT400084778 | Potato | nucleus | 29.57 | 29.41 |
| CDY39968 | Canola | cytosol | 27.96 | 29.38 |
| CDX87319 | Canola | cytosol | 27.96 | 29.38 |
| CDX67952 | Canola | cytosol | 29.03 | 28.88 |
| Bra035174.1-P | Field mustard | cytosol | 27.42 | 28.81 |
| GSMUA_Achr1P09970_001 | Banana | cytosol | 29.57 | 28.65 |
| GSMUA_Achr4P09380_001 | Banana | cytosol | 29.03 | 28.57 |
| Bra003571.1-P | Field mustard | cytosol | 28.49 | 28.34 |
| CDX79380 | Canola | cytosol | 28.49 | 27.32 |
| Solyc03g117310.1.1 | Tomato | cytosol | 30.65 | 27.14 |
| PGSC0003DMT400036834 | Potato | nucleus | 30.11 | 26.67 |
| AT1G80520.1 | Thale cress | nucleus | 27.42 | 26.56 |
| Bra026110.1-P | Field mustard | cytosol | 28.49 | 26.24 |
| KRH47406 | Soybean | cytosol | 28.49 | 26.11 |
| VIT_09s0002g08420.t01 | Wine grape | golgi, plasma membrane | 32.8 | 25.96 |
| CDY36586 | Canola | nucleus | 27.96 | 25.74 |
| CDY61373 | Canola | cytosol | 27.96 | 25.74 |
| AT1G15760.1 | Thale cress | nucleus | 26.88 | 24.75 |
| OQU75953 | Sorghum | cytosol | 33.87 | 23.86 |
| VIT_11s0118g00550.t01 | Wine grape | cytosol | 31.18 | 23.11 |
| KRH44503 | Soybean | cytosol | 26.34 | 22.58 |
| OQU80824 | Sorghum | plastid | 23.12 | 21.18 |
| CDX93107 | Canola | cytosol | 26.88 | 20.16 |
| Bra013153.1-P | Field mustard | cytosol | 26.88 | 20.16 |
| CDY50403 | Canola | cytosol | 26.88 | 20.16 |
| PGSC0003DMT400078859 | Potato | cytosol | 27.42 | 20.16 |
| Solyc07g007350.1.1 | Tomato | cytosol | 27.42 | 20.0 |
| AT2G12462.1 | Thale cress | cytosol | 25.81 | 19.28 |
| KRH12842 | Soybean | cytosol, nucleus, plastid | 27.96 | 18.31 |
| KRH20227 | Soybean | cytosol | 28.49 | 17.97 |
| KRH37823 | Soybean | nucleus | 27.42 | 17.41 |
| KRH03583 | Soybean | nucleus | 29.03 | 16.98 |
Protein Annotations
| EnsemblPlants:EES11537 | EnsemblPlantsGene:SORBI_3006G237800 | EntrezGene:8068472 | Gene3D:1.10.150.50 | InterPro:SAM/pointed_sf | PANTHER:PTHR33915 |
| PANTHER:PTHR33915:SF3 | ProteinID:EES11537 | ProteinID:EES11537.1 | RefSeq:XP_002447209.1 | SEG:seg | SUPFAM:SSF47769 |
| UniParc:UPI0001A86DFB | UniProt:C5Y905 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:57896409..57897035
Molecular Weight (calculated)
20989.1 Da
IEP (calculated)
10.554
GRAVY (calculated)
-0.502
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWHAWLSGA RLEPVLVYEY ALVFARNELE PDDVVFFDHE FLHSMGISVA KHRLEILKLA WRERDRRSRA RPAALARLLL GRVARYVRSL VRRDEDGSTA
101: LVLVPSQQQQ HDAFGRSPCG GVSMHKQQRR GGKALRRAKS EPKGPTPRFS VGGRAAAAVH AVGDVEGGDG DEMVRWDRLF QDLKPN
101: LVLVPSQQQQ HDAFGRSPCG GVSMHKQQRR GGKALRRAKS EPKGPTPRFS VGGRAAAAVH AVGDVEGGDG DEMVRWDRLF QDLKPN
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
Arabidopsis Description
At1g15760 [Source:UniProtKB/TrEMBL;Acc:Q9LMQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.