Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- golgi 5
- plasma membrane 7
- endoplasmic reticulum 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048402_P001 | Maize | extracellular, golgi, plasma membrane | 92.36 | 92.36 |
| Zm00001d027680_P003 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 94.27 | 90.24 |
| Zm00001d032568_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 59.24 | 86.11 |
| Zm00001d018662_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 86.62 | 85.0 |
| Os03t0149200-01 | Rice | extracellular | 81.53 | 81.53 |
| Zm00001d032483_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 64.33 | 81.45 |
| TraesCS4B01G316300.1 | Wheat | extracellular | 80.25 | 80.25 |
| TraesCS4D01G312900.1 | Wheat | extracellular | 79.62 | 79.62 |
| HORVU4Hr1G080140.1 | Barley | extracellular | 78.98 | 78.98 |
| TraesCS4A01G415500.1 | Wheat | extracellular | 78.34 | 78.34 |
| GSMUA_Achr4P26720_001 | Banana | extracellular | 73.25 | 73.72 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 73.25 | 73.25 |
| GSMUA_Achr1P01370_001 | Banana | extracellular | 72.61 | 73.08 |
| OQU81217 | Sorghum | extracellular | 69.43 | 69.43 |
| GSMUA_Achr8P14320_001 | Banana | plasma membrane | 68.15 | 67.72 |
| KRH32166 | Soybean | endoplasmic reticulum | 63.06 | 63.46 |
| KRH67349 | Soybean | plasma membrane | 61.78 | 61.78 |
| KRH19536 | Soybean | endoplasmic reticulum | 61.15 | 61.54 |
| Bra041032.1-P | Field mustard | extracellular | 60.51 | 60.9 |
| Solyc09g089670.2.1 | Tomato | extracellular, plasma membrane, vacuole | 62.42 | 60.87 |
| CDY49421 | Canola | extracellular | 59.87 | 60.26 |
| CDY12771 | Canola | extracellular | 59.87 | 60.26 |
| Solyc03g005470.2.1 | Tomato | plastid | 60.51 | 60.13 |
| CDY47153 | Canola | endoplasmic reticulum | 60.51 | 60.13 |
| CDY12466 | Canola | endoplasmic reticulum | 60.51 | 60.13 |
| KRG95647 | Soybean | plasma membrane | 59.24 | 59.24 |
| Bra039861.1-P | Field mustard | plasma membrane | 59.24 | 58.86 |
| VIT_05s0049g00200.t01 | Wine grape | extracellular | 57.96 | 57.96 |
| AT4G14420.1 | Thale cress | plasma membrane | 57.96 | 57.59 |
| KRG92302 | Soybean | extracellular | 54.78 | 54.78 |
| KRH34500 | Soybean | extracellular | 53.5 | 53.5 |
| CDY59304 | Canola | plasma membrane | 52.87 | 52.87 |
| Bra030565.1-P | Field mustard | plasma membrane | 55.41 | 52.73 |
| CDY15499 | Canola | plasma membrane | 55.41 | 52.73 |
| Bra015305.1-P | Field mustard | extracellular, plasma membrane, vacuole | 54.14 | 52.47 |
| CDX86640 | Canola | extracellular, plasma membrane, vacuole | 54.78 | 52.44 |
| CDY32939 | Canola | plasma membrane | 52.23 | 52.23 |
| Bra027498.1-P | Field mustard | plasma membrane | 52.23 | 52.23 |
| KRG90387 | Soybean | extracellular | 52.23 | 52.23 |
| AT1G04340.1 | Thale cress | plasma membrane | 52.87 | 52.2 |
| CDY18220 | Canola | extracellular, plasma membrane, vacuole | 53.5 | 51.85 |
| CDY60669 | Canola | extracellular, plasma membrane, vacuole | 53.5 | 51.85 |
| KRH31721 | Soybean | endoplasmic reticulum | 51.59 | 51.59 |
| AT5G43460.1 | Thale cress | extracellular | 50.32 | 51.3 |
| Solyc06g053660.2.1 | Tomato | plasma membrane | 47.13 | 47.13 |
| PGSC0003DMT400044245 | Potato | cytosol | 52.87 | 46.89 |
| PGSC0003DMT400034860 | Potato | plastid | 54.14 | 46.2 |
| VIT_05s0049g00210.t01 | Wine grape | plastid | 64.33 | 43.91 |
| KRH73866 | Soybean | plastid | 37.58 | 39.6 |
| CDY10063 | Canola | plasma membrane | 42.04 | 36.46 |
| PGSC0003DMT400042097 | Potato | cytosol | 41.4 | 33.33 |
Protein Annotations
| MapMan:35.2 | EntrezGene:8080552 | UniProt:C5WXW8 | EnsemblPlants:EER92848 | ProteinID:EER92848 | ProteinID:EER92848.1 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:HR_lesion | PFAM:PF05514 | PANTHER:PTHR31474 |
| PANTHER:PTHR31474:SF1 | EnsemblPlantsGene:SORBI_3001G502900 | unigene:Sbi.11571 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001A82B4B |
| RefSeq:XP_002465850.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:77143103..77147252
Molecular Weight (calculated)
17110.2 Da
IEP (calculated)
10.251
GRAVY (calculated)
0.501
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFVSFVGRV LFVAAFLLSA YQEFNEFGTD GGPAAKALQP KFNVFVKNIS AQLGVAVPHI ELKHVIAATI GLKGLGSLLF ILSSSLGAYL LLFYLALITP
101: IIHDFYNYDM EKAEFAQLFG KFTQDVALIG ALLFFLGMKN SIPKRQGKKK AAKAKTN
101: IIHDFYNYDM EKAEFAQLFG KFTQDVALIG ALLFFLGMKN SIPKRQGKKK AAKAKTN
001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
Arabidopsis Description
AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.