Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041032.1-P | Field mustard | extracellular | 97.44 | 97.44 |
| CDY49421 | Canola | extracellular | 96.79 | 96.79 |
| CDY12466 | Canola | endoplasmic reticulum | 92.31 | 91.14 |
| CDY47153 | Canola | endoplasmic reticulum | 92.31 | 91.14 |
| AT4G14420.1 | Thale cress | plasma membrane | 87.82 | 86.71 |
| KRH32166 | Soybean | endoplasmic reticulum | 65.38 | 65.38 |
| Solyc09g089670.2.1 | Tomato | extracellular, plasma membrane, vacuole | 66.03 | 63.98 |
| KRG95647 | Soybean | plasma membrane | 64.1 | 63.69 |
| KRH67349 | Soybean | plasma membrane | 63.46 | 63.06 |
| KRH19536 | Soybean | endoplasmic reticulum | 61.54 | 61.54 |
| Zm00001d048402_P001 | Maize | extracellular, golgi, plasma membrane | 61.54 | 61.15 |
| Solyc03g005470.2.1 | Tomato | plastid | 61.54 | 60.76 |
| EER92848 | Sorghum | extracellular | 60.26 | 59.87 |
| Os03t0149200-01 | Rice | extracellular | 60.26 | 59.87 |
| GSMUA_Achr1P01370_001 | Banana | extracellular | 59.62 | 59.62 |
| Zm00001d027680_P003 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 62.18 | 59.15 |
| GSMUA_Achr2P04100_001 | Banana | extracellular | 59.62 | 58.86 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 58.97 | 58.6 |
| TraesCS4A01G415500.1 | Wheat | extracellular | 58.97 | 58.6 |
| GSMUA_Achr4P26720_001 | Banana | extracellular | 58.33 | 58.33 |
| Os10t0445500-01 | Rice | plasma membrane | 58.97 | 58.23 |
| TraesCS4D01G312900.1 | Wheat | extracellular | 58.33 | 57.96 |
| Zm00001d032568_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 39.74 | 57.41 |
| OQU81217 | Sorghum | extracellular | 57.69 | 57.32 |
| Os04t0181100-01 | Rice | plasma membrane | 57.69 | 57.32 |
| TraesCS4B01G316300.1 | Wheat | extracellular | 57.69 | 57.32 |
| HORVU4Hr1G080140.1 | Barley | extracellular | 57.69 | 57.32 |
| GSMUA_Achr8P14320_001 | Banana | plasma membrane | 57.69 | 56.96 |
| CDY59304 | Canola | plasma membrane | 56.41 | 56.05 |
| TraesCS2B01G040200.1 | Wheat | extracellular | 55.13 | 54.78 |
| CDY32939 | Canola | plasma membrane | 55.13 | 54.78 |
| TraesCS2A01G026900.1 | Wheat | extracellular | 54.49 | 54.14 |
| TraesCS2D01G029000.1 | Wheat | extracellular | 53.85 | 53.5 |
| Zm00001d018662_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 54.49 | 53.12 |
| CDY60669 | Canola | extracellular, plasma membrane, vacuole | 54.49 | 52.47 |
| CDY18220 | Canola | extracellular, plasma membrane, vacuole | 54.49 | 52.47 |
| CDY15499 | Canola | plasma membrane | 54.49 | 51.52 |
| CDX86640 | Canola | extracellular, plasma membrane, vacuole | 53.21 | 50.61 |
| PGSC0003DMT400044245 | Potato | cytosol | 56.41 | 49.72 |
| Zm00001d032483_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 39.1 | 49.19 |
| VIT_05s0049g00210.t01 | Wine grape | plastid | 66.67 | 45.22 |
| PGSC0003DMT400034860 | Potato | plastid | 53.21 | 45.11 |
| Zm00001d025020_P001 | Maize | extracellular, golgi, plasma membrane | 55.77 | 35.95 |
| CDY10063 | Canola | plasma membrane | 41.67 | 35.91 |
Protein Annotations
| EnsemblPlants:CDY12771 | EnsemblPlantsGene:GSBRNA2T00070364001 | GO:A0A078FHS5 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:HR_lesion | PANTHER:PTHR31474 | PANTHER:PTHR31474:SF1 | PFAM:PF05514 | ProteinID:CDY12771 | ProteinID:CDY12771.1 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EB01D9 | UniProt:A0A078FHS5 | MapMan:35.2 |
Description
BnaC04g28700DBnaC04g28700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHS5]
Coordinates
chrLK032026:-:791930..793411
Molecular Weight (calculated)
17194.0 Da
IEP (calculated)
11.006
GRAVY (calculated)
0.176
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MISFVGRALF VSVFLLSAWQ EFNEFGDNGG RAAKSLRPKF NAFVSHVTTH TGQQLPPVDT KLLVAAAIAL KGIGGLLFVS GSSLGAYLLL LHQAVATPIL
101: YDFYNYDVER KEFSQLFSKF TQSVALVGAL LFFIGMKNSR RHGRQLRRKA PKAKAN
101: YDFYNYDVER KEFSQLFSKF TQSVALVGAL LFFIGMKNSR RHGRQLRRKA PKAKAN
001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN
Arabidopsis Description
AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.