CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 3
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015305.1-P	Field mustard	extracellular, plasma membrane, vacuole	64.09	71.6
CDY60669	Canola	extracellular, plasma membrane, vacuole	63.54	70.99
CDY18220	Canola	extracellular, plasma membrane, vacuole	62.43	69.75
CDX86640	Canola	extracellular, plasma membrane, vacuole	62.43	68.9
CDY32939	Canola	plasma membrane	59.67	68.79
CDY15499	Canola	plasma membrane	62.43	68.48
CDY59304	Canola	plasma membrane	58.01	66.88
Zm00001d032568_P001	Maize	endoplasmic reticulum, extracellular, vacuole	28.73	48.15
KRG90387	Soybean	extracellular	40.33	46.5
KRH31721	Soybean	endoplasmic reticulum	39.78	45.86
VIT_05s0049g00200.t01	Wine grape	extracellular	39.23	45.22
KRG92302	Soybean	extracellular	39.23	45.22
KRH34500	Soybean	extracellular	38.12	43.95
Solyc06g053660.2.1	Tomato	plasma membrane	38.12	43.95
TraesCS4A01G415500.1	Wheat	extracellular	37.57	43.31
Os03t0149200-01	Rice	extracellular	37.57	43.31
CDY49421	Canola	extracellular	37.02	42.95
Zm00001d032483_P001	Maize	endoplasmic reticulum, extracellular, vacuole	29.28	42.74
Zm00001d048402_P001	Maize	extracellular, golgi, plasma membrane	36.46	42.04
HORVU4Hr1G080140.1	Barley	extracellular	36.46	42.04
TraesCS4D01G312900.1	Wheat	extracellular	36.46	42.04
EER92848	Sorghum	extracellular	36.46	42.04
TraesCS4B01G316300.1	Wheat	extracellular	36.46	42.04
CDY47153	Canola	endoplasmic reticulum	36.46	41.77
CDY12466	Canola	endoplasmic reticulum	36.46	41.77
CDY12771	Canola	extracellular	35.91	41.67
Os04t0181100-01	Rice	plasma membrane	35.91	41.4
OQU81217	Sorghum	extracellular	35.91	41.4
Zm00001d027680_P003	Maize	endoplasmic reticulum, extracellular, plasma membrane	37.02	40.85
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	35.36	40.76
Os10t0445500-01	Rice	plasma membrane	35.36	40.51
GSMUA_Achr2P04100_001	Banana	extracellular	35.36	40.51
GSMUA_Achr4P26720_001	Banana	extracellular	34.81	40.38
GSMUA_Achr1P01370_001	Banana	extracellular	34.25	39.74
TraesCS2D01G029000.1	Wheat	extracellular	34.25	39.49
TraesCS2B01G040200.1	Wheat	extracellular	33.7	38.85
TraesCS2A01G026900.1	Wheat	extracellular	33.7	38.85
Zm00001d018662_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	34.25	38.75
GSMUA_Achr8P14320_001	Banana	plasma membrane	33.7	38.61
KRH73866	Soybean	plastid	28.73	34.9
PGSC0003DMT400042097	Potato	cytosol	35.91	33.33
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	35.36	26.45

Protein Annotations

EnsemblPlants:CDY10063	EnsemblPlantsGene:GSBRNA2T00031859001	GO:A0A078FDF4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF4	PFAM:PF05514	ProteinID:CDY10063	ProteinID:CDY10063.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE68CF	UniProt:A0A078FDF4	MapMan:35.2	:

Description

BnaC08g43880DBnaC08g43880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDF4]

Coordinates

chrLK032000:+:760767..762537

Molecular Weight (calculated)

20507.4 Da

IEP (calculated)

10.064

GRAVY (calculated)

0.391

Length

181 amino acids

Sequence
(BLAST)

001: MRHFYQDKRQ TSTSIYQFPF LFLQLFVLGF VIRFNDFGAD GGPAAKELTQ KLHLTKAHLS SRLGVALPDI EVKQVVWAIV ALKGLGGLLF VVGNIVGAYL
101: LAFYLVVVSP ILYDFYNYGP EDRQFSLLLT EFLQVFFCAL LFFIGVKNST MTSSKQNINK RTPPSLKLLK SCSILFHTQR L

Best Arabidopsis Sequence Match ( AT1G04340.1 )
(BLAST)

001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA

Arabidopsis Description

At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.