Factsheet for PGSC0003DMT400042097

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
peroxisome 1
vacuole 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009054
PGSC0003DMT400015077
PGSC0003DMT400039734
PGSC0003DMT400047264
PGSC0003DMT400050482
PGSC0003DMT400064369

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04340.1	PGSC0003DMT400039734	AT1G03630.1	21798944
AT1G04340.1	PGSC0003DMT400047264	AT1G03630.1	21798944
AT1G04340.1	PGSC0003DMT400064369	AT1G03630.1	21798944
AT1G04340.1	PGSC0003DMT400009054	AT3G50910.1	21798944
AT5G43460.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT5G43460.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g053660.2.1	Tomato	plasma membrane	64.62	80.25
VIT_05s0049g00200.t01	Wine grape	extracellular	41.03	50.96
AT5G43460.1	Thale cress	extracellular	37.44	47.4
AT1G04340.1	Thale cress	plasma membrane	37.44	45.91
KRH31721	Soybean	endoplasmic reticulum	36.92	45.86
KRG92302	Soybean	extracellular	36.92	45.86
KRG90387	Soybean	extracellular	36.92	45.86
Bra015305.1-P	Field mustard	extracellular, plasma membrane, vacuole	37.95	45.68
CDY18220	Canola	extracellular, plasma membrane, vacuole	37.95	45.68
CDY60669	Canola	extracellular, plasma membrane, vacuole	37.95	45.68
Zm00001d032568_P001	Maize	endoplasmic reticulum, extracellular, vacuole	25.13	45.37
KRH34500	Soybean	extracellular	35.9	44.59
Bra027498.1-P	Field mustard	plasma membrane	35.9	44.59
CDY59304	Canola	plasma membrane	35.9	44.59
CDY32939	Canola	plasma membrane	35.9	44.59
CDX86640	Canola	extracellular, plasma membrane, vacuole	36.92	43.9
CDY15499	Canola	plasma membrane	36.92	43.64
Bra030565.1-P	Field mustard	plasma membrane	36.92	43.64
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	34.87	43.31
TraesCS4A01G415500.1	Wheat	extracellular	34.87	43.31
Os04t0181100-01	Rice	plasma membrane	34.87	43.31
OQU81217	Sorghum	extracellular	34.87	43.31
GSMUA_Achr1P01370_001	Banana	extracellular	34.36	42.95
Zm00001d032483_P001	Maize	endoplasmic reticulum, extracellular, vacuole	27.18	42.74
GSMUA_Achr4P26720_001	Banana	extracellular	33.85	42.31
Os03t0149200-01	Rice	extracellular	33.85	42.04
HORVU4Hr1G080140.1	Barley	extracellular	33.85	42.04
TraesCS4D01G312900.1	Wheat	extracellular	33.85	42.04
TraesCS4B01G316300.1	Wheat	extracellular	33.85	42.04
Zm00001d048402_P001	Maize	extracellular, golgi, plasma membrane	33.33	41.4
EER92848	Sorghum	extracellular	33.33	41.4
TraesCS2D01G029000.1	Wheat	extracellular	33.33	41.4
GSMUA_Achr2P04100_001	Banana	extracellular	33.33	41.14
TraesCS2B01G040200.1	Wheat	extracellular	32.82	40.76
TraesCS2A01G026900.1	Wheat	extracellular	32.82	40.76
Os10t0445500-01	Rice	plasma membrane	32.82	40.51
Zm00001d027680_P003	Maize	endoplasmic reticulum, extracellular, plasma membrane	33.85	40.24
GSMUA_Achr8P14320_001	Banana	plasma membrane	31.79	39.24
Zm00001d018662_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	29.74	36.25
CDY10063	Canola	plasma membrane	33.33	35.91
KRH73866	Soybean	plastid	27.18	35.57
PGSC0003DMT400044245	Potato	cytosol	31.79	35.03
PGSC0003DMT400034860	Potato	plastid	29.23	30.98
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	33.33	26.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400042097	EnsemblPlantsGene:PGSC0003DMG400016325	EntrezGene:102592921	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF4	PFAM:PF05514	PGSC:PGSC0003DMG400016325	SEG:seg
TMHMM:TMhelix	UniParc:UPI00029634E9	UniProt:M1BCI1	MapMan:35.2	:	:

Description

Lesion-inducing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016325]

Coordinates

chr6:+:39712508..39713884

Molecular Weight (calculated)

21732.2 Da

IEP (calculated)

9.562

GRAVY (calculated)

0.377

Length

195 amino acids

Sequence
(BLAST)

001: MPCRSLHLSS YDITLNSPNE TNKLTILVSI ASFPLKRFLF FLDDAKILPT KIMLVEMRFC RFHEFGEDGG PAAKELAPKV AGLQDFLESK LGTGTPKIDV
101: RHVVAGFMAL KGLGGLLLVF GCFTGAFLLI CYLIMATPLL HDFSHFNIGE PQYFIVLQEF LQCLALLGAL LFFVGMKNSI NRRLPKKKTL KSKTT

Best Arabidopsis Sequence Match ( AT1G04340.1 )
(BLAST)

001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA

Arabidopsis Description

At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.