Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 7
- golgi 5
- plasma membrane 7
- endoplasmic reticulum 5
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
28499913
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG90387 | Soybean | extracellular | 96.82 | 96.82 |
| KRH34500 | Soybean | extracellular | 75.8 | 75.8 |
| KRG92302 | Soybean | extracellular | 75.16 | 75.16 |
| VIT_05s0049g00200.t01 | Wine grape | extracellular | 69.43 | 69.43 |
| AT5G43460.1 | Thale cress | extracellular | 63.06 | 64.29 |
| CDY59304 | Canola | plasma membrane | 60.51 | 60.51 |
| Bra015305.1-P | Field mustard | extracellular, plasma membrane, vacuole | 61.15 | 59.26 |
| Bra027498.1-P | Field mustard | plasma membrane | 59.24 | 59.24 |
| CDY32939 | Canola | plasma membrane | 59.24 | 59.24 |
| CDY18220 | Canola | extracellular, plasma membrane, vacuole | 60.51 | 58.64 |
| CDY60669 | Canola | extracellular, plasma membrane, vacuole | 60.51 | 58.64 |
| KRH67349 | Soybean | plasma membrane | 58.6 | 58.6 |
| KRG95647 | Soybean | plasma membrane | 58.6 | 58.6 |
| AT1G04340.1 | Thale cress | plasma membrane | 58.6 | 57.86 |
| KRH32166 | Soybean | endoplasmic reticulum | 57.32 | 57.69 |
| CDX86640 | Canola | extracellular, plasma membrane, vacuole | 59.87 | 57.32 |
| CDY15499 | Canola | plasma membrane | 59.24 | 56.36 |
| Bra030565.1-P | Field mustard | plasma membrane | 59.24 | 56.36 |
| Solyc06g053660.2.1 | Tomato | plasma membrane | 55.41 | 55.41 |
| GSMUA_Achr1P01370_001 | Banana | extracellular | 54.78 | 55.13 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 54.78 | 54.78 |
| Os03t0149200-01 | Rice | extracellular | 54.78 | 54.78 |
| KRH19536 | Soybean | endoplasmic reticulum | 54.14 | 54.49 |
| GSMUA_Achr4P26720_001 | Banana | extracellular | 54.14 | 54.49 |
| GSMUA_Achr2P04100_001 | Banana | extracellular | 54.14 | 53.8 |
| Os04t0181100-01 | Rice | plasma membrane | 53.5 | 53.5 |
| HORVU4Hr1G080140.1 | Barley | extracellular | 52.23 | 52.23 |
| TraesCS4D01G312900.1 | Wheat | extracellular | 52.23 | 52.23 |
| OQU81217 | Sorghum | extracellular | 52.23 | 52.23 |
| TraesCS4B01G316300.1 | Wheat | extracellular | 51.59 | 51.59 |
| TraesCS4A01G415500.1 | Wheat | extracellular | 51.59 | 51.59 |
| Zm00001d048402_P001 | Maize | extracellular, golgi, plasma membrane | 51.59 | 51.59 |
| EER92848 | Sorghum | extracellular | 51.59 | 51.59 |
| TraesCS2D01G029000.1 | Wheat | extracellular | 50.96 | 50.96 |
| Zm00001d027680_P003 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 52.87 | 50.61 |
| KRH73866 | Soybean | plastid | 47.77 | 50.34 |
| TraesCS2A01G026900.1 | Wheat | extracellular | 50.32 | 50.32 |
| TraesCS2B01G040200.1 | Wheat | extracellular | 50.32 | 50.32 |
| GSMUA_Achr8P14320_001 | Banana | plasma membrane | 50.32 | 50.0 |
| Zm00001d018662_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 49.68 | 48.75 |
| Os10t0445500-01 | Rice | plasma membrane | 49.04 | 48.73 |
| Zm00001d032568_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 33.12 | 48.15 |
| Zm00001d032483_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 34.39 | 43.55 |
| CDY10063 | Canola | plasma membrane | 45.86 | 39.78 |
| PGSC0003DMT400042097 | Potato | cytosol | 45.86 | 36.92 |
| Zm00001d025020_P001 | Maize | extracellular, golgi, plasma membrane | 50.96 | 33.06 |
Protein Annotations
| EMBL:ACUP02006078 | EnsemblPlants:KRH31721 | EnsemblPlantsGene:GLYMA_10G007800 | EntrezGene:100499785 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:HR_lesion | PANTHER:PTHR31474 | PANTHER:PTHR31474:SF4 | PFAM:PF05514 | ProteinID:KRH31721 |
| ProteinID:KRH31721.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00023C8A59 | UniProt:I1L7J1 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:748488..750994
Molecular Weight (calculated)
17350.6 Da
IEP (calculated)
10.729
GRAVY (calculated)
0.444
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSSFLGRV LFASLFILSA WQMFNEFDAN GGPISKELIP KLSVVKNNLS SKLGVALPDI DARQFIATII FLKGVGGILF VFGSTFGSFL LLLHLAITTP
101: LLYDFYNHSP GKPKYNQLLN DFLLNTALFG ALLFFIGMKN SIPRSQLRKK TPKAKTV
101: LLYDFYNHSP GKPKYNQLLN DFLLNTALFG ALLFFIGMKN SIPRSQLRKK TPKAKTV
001: MGFFSFLGRV LFASLFILSA WQMFNDGGPA AKELAPKLDL VKAHLSSRLG VTLPKIEVRQ VVATIIALKG VGGLLFVIGN TFGAYLLASY LVVFGPILYD
101: FYNYGPQERH FSLLLTEFLQ SVALFGALLF FIGMKNSTPA KKNLKKRTPK PKAA
101: FYNYGPQERH FSLLLTEFLQ SVALFGALLF FIGMKNSTPA KKNLKKRTPK PKAA
Arabidopsis Description
At5g43460/MWF20_18 [Source:UniProtKB/TrEMBL;Acc:Q9LSW5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.