Factsheet for GSMUA_Achr4P26720_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P12060_001
GSMUA_Achr1P20280_001
GSMUA_Achr2P22980_001
GSMUA_Achr3P14270_001
GSMUA_Achr5P20880_001
GSMUA_Achr6P08980_001
GSMUA_Achr7P04280_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04340.1	GSMUA_Achr11P...	AT1G03630.1	21798944
AT1G04340.1	GSMUA_Achr3P14270_001	AT1G03630.1	21798944
AT1G04340.1	GSMUA_Achr7P04280_001	AT1G03630.1	21798944
AT1G04340.1	GSMUA_Achr1P12060_001	AT3G50910.1	21798944
AT1G04340.1	GSMUA_Achr2P22980_001	AT3G50910.1	21798944
AT1G04340.1	GSMUA_Achr6P08980_001	AT3G50910.1	21798944
AT5G43460.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT5G43460.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT5G43460.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT5G43460.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT5G43460.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P01370_001	Banana	extracellular	88.46	88.46
GSMUA_Achr8P14320_001	Banana	plasma membrane	82.69	81.65
Os03t0149200-01	Rice	extracellular	79.49	78.98
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	78.85	78.34
TraesCS4D01G312900.1	Wheat	extracellular	77.56	77.07
TraesCS4B01G316300.1	Wheat	extracellular	77.56	77.07
TraesCS4A01G415500.1	Wheat	extracellular	76.92	76.43
HORVU4Hr1G080140.1	Barley	extracellular	76.28	75.8
Os04t0181100-01	Rice	plasma membrane	75.0	74.52
OQU81217	Sorghum	extracellular	74.36	73.89
TraesCS2B01G040200.1	Wheat	extracellular	74.36	73.89
GSMUA_Achr2P04100_001	Banana	extracellular	74.36	73.42
TraesCS2A01G026900.1	Wheat	extracellular	73.72	73.25
EER92848	Sorghum	extracellular	73.72	73.25
TraesCS2D01G029000.1	Wheat	extracellular	73.72	73.25
Zm00001d048402_P001	Maize	extracellular, golgi, plasma membrane	72.44	71.97
Os10t0445500-01	Rice	plasma membrane	71.15	70.25
Zm00001d027680_P003	Maize	endoplasmic reticulum, extracellular, plasma membrane	73.72	70.12
Zm00001d032568_P001	Maize	endoplasmic reticulum, extracellular, vacuole	47.44	68.52
Zm00001d018662_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	68.59	66.88
KRH32166	Soybean	endoplasmic reticulum	65.38	65.38
Zm00001d032483_P001	Maize	endoplasmic reticulum, extracellular, vacuole	50.64	63.71
KRH67349	Soybean	plasma membrane	64.1	63.69
KRH19536	Soybean	endoplasmic reticulum	63.46	63.46
Solyc09g089670.2.1	Tomato	extracellular, plasma membrane, vacuole	65.38	63.35
KRG95647	Soybean	plasma membrane	63.46	63.06
VIT_05s0049g00200.t01	Wine grape	extracellular	61.54	61.15
Solyc03g005470.2.1	Tomato	plastid	61.54	60.76
CDY12466	Canola	endoplasmic reticulum	60.26	59.49
CDY47153	Canola	endoplasmic reticulum	60.26	59.49
Bra039861.1-P	Field mustard	plasma membrane	59.62	58.86
Bra041032.1-P	Field mustard	extracellular	58.33	58.33
CDY12771	Canola	extracellular	58.33	58.33
AT4G14420.1	Thale cress	plasma membrane	58.97	58.23
CDY49421	Canola	extracellular	57.69	57.69
CDY59304	Canola	plasma membrane	56.41	56.05
KRG90387	Soybean	extracellular	55.13	54.78
AT5G43460.1	Thale cress	extracellular	53.85	54.55
KRH31721	Soybean	endoplasmic reticulum	54.49	54.14
KRG92302	Soybean	extracellular	54.49	54.14
Bra027498.1-P	Field mustard	plasma membrane	54.49	54.14
CDY32939	Canola	plasma membrane	54.49	54.14
KRH34500	Soybean	extracellular	53.85	53.5
CDY15499	Canola	plasma membrane	55.13	52.12
Bra030565.1-P	Field mustard	plasma membrane	55.13	52.12
AT1G04340.1	Thale cress	plasma membrane	52.56	51.57
CDY60669	Canola	extracellular, plasma membrane, vacuole	53.21	51.23
CDY18220	Canola	extracellular, plasma membrane, vacuole	53.21	51.23
Bra015305.1-P	Field mustard	extracellular, plasma membrane, vacuole	53.21	51.23
CDX86640	Canola	extracellular, plasma membrane, vacuole	53.85	51.22
PGSC0003DMT400044245	Potato	cytosol	57.69	50.85
Solyc06g053660.2.1	Tomato	plasma membrane	49.36	49.04
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	73.72	47.52
PGSC0003DMT400034860	Potato	plastid	54.49	46.2
VIT_05s0049g00210.t01	Wine grape	plastid	65.38	44.35
KRH73866	Soybean	plastid	37.18	38.93
CDY10063	Canola	plasma membrane	40.38	34.81
PGSC0003DMT400042097	Potato	cytosol	42.31	33.85

Protein Annotations

EnsemblPlants:GSMUA_Achr4P26720_001	EnsemblPlants:GSMUA_Achr4T26720_001	EnsemblPlantsGene:GSMUA_Achr4G26720_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF5	PFAM:PF05514	SEG:seg	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI000294BAD3	UniProt:M0SSD4	MapMan:35.2	:	:

Description

nicotiana lesion-inducing like, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G26720_001]

Coordinates

chr4:-:25882748..25886453

Molecular Weight (calculated)

17582.8 Da

IEP (calculated)

10.599

GRAVY (calculated)

0.442

Length

156 amino acids

Sequence
(BLAST)

001: MGFVSFFGRV LFASVFLLSA YQEFSEFGVN GGPAAKALKP KFNLFMKHTA SRIGIAVPHV EMRHVIASTI FLKGFGGLLF IFSSSFGAYL LLVYLAFITP
101: IVYDFYNYDI EKAEFVQLFS KFNQNLALFG ALLFFLGMKN SIPKRQKKKV TKTKTN

Best Arabidopsis Sequence Match ( AT4G14420.1 )
(BLAST)

001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN

Arabidopsis Description

AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.